Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40266
         (573 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   5.6  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   7.5  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   9.9  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   9.9  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   9.9  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    21   9.9  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -1

Query: 222 QTLTSWLLHVARQTRHRDWW 163
           QTL  WL H        DW+
Sbjct: 658 QTLAMWLNHNPNYAEVTDWY 677


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 308  FGNMKSSHRHLRYLVQS 258
            FG + S H HL  L++S
Sbjct: 1301 FGKLCSLHHHLSKLIKS 1317


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = -1

Query: 285 PSSSVSCTVSLICDCPHYHGNQTLTSWLLHVARQTRH 175
           P S    T    CDCP+    + L    +H+ ++  H
Sbjct: 279 PRSQRRYTGRATCDCPNCQEAERLGPAGVHLRKKNIH 315


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -1

Query: 411 DLVPVLSSCQSEHEEPADQK*EFLLQQP 328
           +L+  L   Q+E+E P+++  + ++ QP
Sbjct: 317 ELIHRLVYFQNEYEHPSEEDVKRIINQP 344


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 299 CYRKSSCTHFGCWRRNSYF*SAGSSC 376
           CY       FG  +R S+F +  +SC
Sbjct: 150 CYSTYGIQVFGTMQRTSFFKTFLNSC 175


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = -1

Query: 270 SCTVSLICDC 241
           +CT+ ++CDC
Sbjct: 250 NCTLIIMCDC 259


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,165
Number of Sequences: 336
Number of extensions: 3024
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14203976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)