Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40266
(573 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos... 103 1e-23
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 103 1e-23
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 28 1.1
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 28 1.1
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ... 27 1.5
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 27 2.0
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe... 27 2.0
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 27 2.6
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 27 2.6
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch... 26 3.4
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 26 3.4
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ... 26 4.5
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 26 4.5
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 26 4.5
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce... 25 6.0
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 25 7.9
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 25 7.9
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 25 7.9
>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 103 bits (248), Expect = 1e-23
Identities = 50/83 (60%), Positives = 63/83 (75%)
Frame = +3
Query: 258 RLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVR 437
RL +PK++VAAL T+ ARARIL AGGE+LT DQLALRAPTG TVL++G+++AREA R
Sbjct: 93 RLLTVPKLSVAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLLRGKKHAREAYR 152
Query: 438 HFGPAPGAPRSHTKPYVRTKGHE 506
HFG P H PYVR++G +
Sbjct: 153 HFG---FGPHKHKAPYVRSEGRK 172
Score = 58.4 bits (135), Expect = 7e-10
Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVS 180
I H RK +R++ S+++ T+++FN+ +L+RLF S+ NRPPIS+S
Sbjct: 5 IERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISIS 64
Query: 181 RLARHM*KPTR--EGLIAVVVGTVTNE 255
++A + + EG V+VGTVT++
Sbjct: 65 KIAALTSRKSASLEGKTTVIVGTVTDD 91
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 103 bits (248), Expect = 1e-23
Identities = 49/83 (59%), Positives = 63/83 (75%)
Frame = +3
Query: 258 RLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVR 437
R+ +PK+++AAL T+ ARARIL AGGE+LT DQLALRAPTG TVLV+G+++AREA R
Sbjct: 93 RMLTVPKLSIAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLVRGKKHAREAYR 152
Query: 438 HFGPAPGAPRSHTKPYVRTKGHE 506
HFG P H PYVR++G +
Sbjct: 153 HFG---FGPHKHKAPYVRSEGRK 172
Score = 54.0 bits (124), Expect = 1e-08
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVS 180
I H +K +R++ S+++ T+++FN+ +L+RLF S+ NRPPIS+S
Sbjct: 5 IERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISIS 64
Query: 181 RLA--RHM*KPTREGLIAVVVGTVTNE 255
++A + + VVVGTVT++
Sbjct: 65 KIAALTSRKSASSQNKTTVVVGTVTDD 91
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 1.1
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = -2
Query: 299 MKSSHRHLRYLVQSHSFVTVPTTTAIKPSRVGFYMWRAKRDTEIGGRLIRL 147
+K+S HL +Q + + P + +Y+WR + E +IRL
Sbjct: 231 LKASRIHLETSIQPKLMLLTGIILLVAPILLSYYVWRRRIHFETSFNIIRL 281
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 27.9 bits (59), Expect = 1.1
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = -2
Query: 512 LLFMSLGANIGFSVRARCSWSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKS----KN 345
LL +SLGA+ G W RA + C I L+ + + TK + KN
Sbjct: 304 LLGISLGASSG-------KWRRANIL-CYLIIGGCLFVFAFIYDTFTKRNAVLPPPFFKN 355
Query: 344 FSSSSQNACTSFF 306
SS++ AC+SFF
Sbjct: 356 RSSAALLACSSFF 368
>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 353 SKNFSSSSQNACTSFFGNMKSSHRH 279
SKN SS N+ TSFF ++ + +RH
Sbjct: 2 SKNSFSSMANSVTSFFQSLTTPNRH 26
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 27.1 bits (57), Expect = 2.0
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -2
Query: 509 LFMSLGANIGFSVRARCSWSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKN 345
LF+S G IG ++ C++ I+++ Y Y LL T S LI +++
Sbjct: 630 LFLSFGITIGSALYGWMDKDATDADTCMSIIAVSPYWYILLIPIFTLSLLIVTQS 684
>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 27.1 bits (57), Expect = 2.0
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +1
Query: 331 LLEEKFLLLISWLFVLRLARRQY----WYKVSEMLVRQCVTLALLQEHRAL 471
LL F+ ++ ++ LRL + WY ++++L+ +C T + RAL
Sbjct: 134 LLLSSFVFILPYMPSLRLQESEVFSAQWYPLADLLLPECQTRIQIDSSRAL 184
>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 427
Score = 26.6 bits (56), Expect = 2.6
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -2
Query: 350 KNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHSFVTVPT 234
KN+ SS + TS + N+ +S+R +R +QS + PT
Sbjct: 170 KNWLSSELSHSTSKYLNITTSNRFIRKAIQSLVKIEFPT 208
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 26.6 bits (56), Expect = 2.6
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = -2
Query: 398 YCLLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHSFVTVPTTTA 225
Y + +ST + + S F+ +QN+ + F N +S + + Q++ PTT+A
Sbjct: 160 YKSIFDKSTSNSTVTSNQFNKPTQNSPFNSFSNNNNSFNNNQ---QANDIFGAPTTSA 214
>SPBC32H8.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 26.2 bits (55), Expect = 3.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 257 HSFVTVPTTTAIKPSRVGFYMWR 189
H F T T+ +K S +GF+ WR
Sbjct: 41 HDFGTALFTSLVKASMLGFHNWR 63
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 26.2 bits (55), Expect = 3.4
Identities = 21/77 (27%), Positives = 33/77 (42%)
Frame = -2
Query: 458 SWSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRH 279
S S + + TS S + +S S+ S S + SSSS + +S + +SHR
Sbjct: 122 SSSSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSSSRTTSHRT 181
Query: 278 LRYLVQSHSFVTVPTTT 228
+ S+ P TT
Sbjct: 182 TSHKSSSYRPTVFPYTT 198
>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 485
Score = 25.8 bits (54), Expect = 4.5
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +1
Query: 391 RQYWYKVSEMLVRQCVTLALLQ--EHRAL-TLNPMFAPRDMKSKAQSS 525
+ +W VS + CV L L+ +HR++ L M P KS SS
Sbjct: 30 KSFWIAVSSSVTTACVILGTLEFRKHRSIRRLQSMIVPEAGKSIQLSS 77
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.8 bits (54), Expect = 4.5
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = -2
Query: 371 KSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHSFVTVPTTTAIKP 216
+S L S +F N+K++H H+ +SHSF T KP
Sbjct: 309 QSPLKTSNSFFKELSPHSQITLSNVKNNHSHVGSQTKSHSFATPSVFDNNKP 360
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 25.8 bits (54), Expect = 4.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 264 YKIPKMTVAALHVTEKARARILAAGGEILTFDQL 365
Y+IP + + + TE+A+ R G+IL D +
Sbjct: 63 YEIPFLLIKHIENTEEAKLRFALPQGQILEIDTI 96
>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 6.0
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +3
Query: 411 QRNAREAVRHFGPAPGAPRSHTKP---YVRTKGHEKQGPVVVLMS 536
+R E + H G SH K Y+R+ GHEK+G V + S
Sbjct: 416 KRKVTEILLHQLGFKGISLSHGKEIVRYLRSLGHEKEGQGVFMKS 460
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 25.0 bits (52), Expect = 7.9
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +3
Query: 84 QILGQTYKCQIQSDRSTPALY--EPYQPATNLCVSFGAPHV 200
++L + + QI+++ S Y E Y P+ +L +S G HV
Sbjct: 383 KLLSKEFASQIRNNISLSKTYPWEHYNPSYDLPISHGTTHV 423
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 7.9
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +3
Query: 357 DQLALRAPTGKKTVLVQGQRNAREAVRHFGPA 452
D++ + P G K + Q ++ R A++H+ A
Sbjct: 120 DEILPKEPAGSKEAMQQKKKEKRAALKHYREA 151
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 25.0 bits (52), Expect = 7.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 391 RQYWYKVSEMLVRQCVTLALLQEHRALTLN 480
R +YK SE ++ Q + +LQ+ ALT N
Sbjct: 104 RYCYYKESEKILGQTYGMLVLQDFEALTPN 133
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,441,045
Number of Sequences: 5004
Number of extensions: 50748
Number of successful extensions: 175
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -