Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40266
(573 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 128 4e-30
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 126 1e-29
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 108 4e-24
06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904... 29 2.6
03_06_0500 - 34361139-34362006,34362295-34362818,34362908-343631... 28 4.6
02_05_0895 - 32593155-32593190,32594228-32594279,32594544-325945... 28 4.6
02_02_0453 + 10420585-10421661,10422015-10422146,10422232-104224... 28 4.6
11_01_0572 + 4565353-4565535,4566856-4567095,4567922-4568086,456... 28 6.1
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848... 27 8.0
01_06_1208 + 35424241-35424370,35424415-35424728,35424782-354249... 27 8.0
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 128 bits (308), Expect = 4e-30
Identities = 58/83 (69%), Positives = 70/83 (84%)
Frame = +3
Query: 258 RLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVR 437
R+Y++P M VAAL TE ARARI+ AGGE LTFDQLALRAP G+ TVL++G +NAREAV+
Sbjct: 98 RIYEVPAMKVAALRFTETARARIINAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVK 157
Query: 438 HFGPAPGAPRSHTKPYVRTKGHE 506
HFGPAPG P S+TKPYVR+KG +
Sbjct: 158 HFGPAPGVPHSNTKPYVRSKGRK 180
Score = 60.5 bits (140), Expect = 9e-10
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Frame = +1
Query: 16 DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 195
++K +RT +S+D+ T + FN ++L+RLFMS+ NRPP+S+ RL R
Sbjct: 11 NKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRPPLSMRRLVRF 70
Query: 196 M--*KPTREGL----IAVVVGTVTNE 255
M P R + IAV+VGTVT++
Sbjct: 71 MEGKVPDRHAISGDQIAVIVGTVTDD 96
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 126 bits (304), Expect = 1e-29
Identities = 59/83 (71%), Positives = 68/83 (81%)
Frame = +3
Query: 258 RLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVR 437
R+ +IPKM V AL TE ARARI+ AGGE LTFDQLALRAP G+ TVL++G +NAREAVR
Sbjct: 91 RIQEIPKMKVTALRFTETARARIVNAGGECLTFDQLALRAPLGENTVLLRGPKNAREAVR 150
Query: 438 HFGPAPGAPRSHTKPYVRTKGHE 506
HFG APG P SHTKPYVR+KG +
Sbjct: 151 HFGKAPGVPHSHTKPYVRSKGRK 173
Score = 65.3 bits (152), Expect = 3e-11
Identities = 32/80 (40%), Positives = 49/80 (61%)
Frame = +1
Query: 16 DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 195
++K +RT +S D+ T + FN ++L+RLFMS+ NRPP+S+ RLA+
Sbjct: 11 NKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRPPLSLRRLAKF 70
Query: 196 M*KPTREGLIAVVVGTVTNE 255
M + E IAV+VGTVT++
Sbjct: 71 M-EGKEENNIAVIVGTVTDD 89
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 108 bits (259), Expect = 4e-24
Identities = 57/100 (57%), Positives = 69/100 (69%), Gaps = 17/100 (17%)
Frame = +3
Query: 258 RLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKT-------------- 395
R+Y++P M VAAL TE ARARI+ GGE LTFDQLALRAP G+ T
Sbjct: 90 RVYEVPAMKVAALRFTETARARIVNTGGECLTFDQLALRAPLGQNTYIAMPEILTIDNFA 149
Query: 396 ---VLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGHE 506
VL++G +NAREAV+HFGPAPG P S+TKPYVR+KG +
Sbjct: 150 LLQVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRK 189
Score = 66.9 bits (156), Expect = 1e-11
Identities = 34/80 (42%), Positives = 48/80 (60%)
Frame = +1
Query: 16 DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 195
++K +RT KS D+ T + FN ++LRRLFMS+ NRPP+S+ RL R
Sbjct: 11 NKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRPPLSLRRLVRF 70
Query: 196 M*KPTREGLIAVVVGTVTNE 255
M +E IAV+VGTVT++
Sbjct: 71 M--EGKENQIAVIVGTVTDD 88
>06_01_1101 -
9044679-9045320,9045484-9045890,9046020-9046274,
9046375-9046498,9047237-9047289,9047388-9047648,
9047795-9047848,9047975-9048458,9048554-9048592
Length = 772
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 239 PTTTAIKPSRVGFYMWR-AKRDTEIGGRLIRLIKSR 135
P TTA KP RV F + + K D E+ G L L+++R
Sbjct: 676 PNTTAPKPKRVRFALPKDTKIDREVRGELQELMEAR 711
>03_06_0500 -
34361139-34362006,34362295-34362818,34362908-34363125,
34363259-34363406
Length = 585
Score = 28.3 bits (60), Expect = 4.6
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = -2
Query: 506 FMSLGANIGFSVRARCSWSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQ 327
F+ +G GF++ + +V + S+ + LY + A SQLI + + +S
Sbjct: 455 FLLMGIGDGFALVGLQEYFYDQVPDSMRSLGIGLYLSVIGAGSFLSSQLITAVDRVTSHG 514
Query: 326 NACTSFFG-NMKSSHRHLRY 270
A +FG ++ SS L Y
Sbjct: 515 GAAAGWFGKDLNSSRLDLFY 534
>02_05_0895 -
32593155-32593190,32594228-32594279,32594544-32594584,
32594795-32594906,32595195-32595268,32595349-32595587,
32595710-32596678,32596725-32596878,32596957-32597244,
32597393-32597534,32598679-32598752,32598870-32598890
Length = 733
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 254 SETVQDTEDDGGCSSCYRKSS 316
SE VQ +DD G S C R+SS
Sbjct: 252 SENVQSDDDDSGPSQCMRESS 272
>02_02_0453 +
10420585-10421661,10422015-10422146,10422232-10422456,
10422555-10422680,10422777-10422839,10423214-10423296,
10424078-10424309,10424421-10424489,10424532-10424731,
10424819-10424894,10425015-10425081,10425194-10425471,
10425600-10425787,10426235-10426391,10426496-10426741
Length = 1072
Score = 28.3 bits (60), Expect = 4.6
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 273 VSCTVSLICDCPHYHGN 223
+ C+ S +C CPHY G+
Sbjct: 1 MGCSPSKVCSCPHYKGS 17
>11_01_0572 +
4565353-4565535,4566856-4567095,4567922-4568086,
4568612-4568887
Length = 287
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 349 LLLISWLFVLRLARRQYWYKVSEML 423
LL+++WLFV+ RR W +V E+L
Sbjct: 143 LLVLAWLFVIDFGRR-VWGEVDELL 166
>07_03_0435 +
18182657-18183509,18184477-18184574,18184663-18184833,
18185524-18185624,18185702-18185837,18186007-18186057,
18186202-18186489,18186610-18186844,18186924-18187204,
18187336-18187557
Length = 811
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +3
Query: 129 STPALYEPYQPATNLCV-SFGAPHVEANS 212
S PA ++ Y+P+TNL + S+ P+ A+S
Sbjct: 701 SVPAYFQQYEPSTNLILPSYLLPYAAASS 729
>01_06_1208 +
35424241-35424370,35424415-35424728,35424782-35424967,
35425361-35425523,35425601-35425787,35425875-35426016
Length = 373
Score = 27.5 bits (58), Expect = 8.0
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Frame = +1
Query: 361 SWLFVLRLARRQYWYKVSEMLVRQCV-------TLALLQEHRALTLNPMFAPRDMKS 510
SW V L + Q+WY VS+ L + L L+ + L L PM P S
Sbjct: 199 SWADVELLKKHQHWYNVSKTLAEKAAWDFAAKEGLQLVALNPGLVLGPMLMPSPTSS 255
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,808,275
Number of Sequences: 37544
Number of extensions: 375899
Number of successful extensions: 1061
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -