Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40266
(573 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.) 100 1e-21
SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.51
SB_48685| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_24186| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_32577| Best HMM Match : PH (HMM E-Value=7e-17) 28 6.2
SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0) 27 8.2
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 100 bits (239), Expect = 1e-21
Identities = 47/73 (64%), Positives = 56/73 (76%)
Frame = +3
Query: 258 RLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVR 437
R++++P + + AL +E ARARIL AGGEILTFDQLALRAP G+ TVL+QG R AREA R
Sbjct: 198 RIFEVPALKICALRFSETARARILKAGGEILTFDQLALRAPLGQNTVLLQGPRKAREAER 257
Query: 438 HFGPAPGAPRSHT 476
H G APG P S T
Sbjct: 258 HMGLAPGVPHSDT 270
Score = 67.7 bits (158), Expect = 6e-12
Identities = 36/85 (42%), Positives = 49/85 (57%)
Frame = +1
Query: 1 INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVS 180
I KH +K R E SQ++ TNAKFNQIV++RL MSR RPP+S++
Sbjct: 112 IEKKHPKKNYRREPVSQNVYIRLLVKLYRFLSRRTNAKFNQIVMKRLCMSRTKRPPLSLA 171
Query: 181 RLARHM*KPTREGLIAVVVGTVTNE 255
RL R M + I VVVG++T++
Sbjct: 172 RLVRKMKASGHKDKICVVVGSITDD 196
>SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 31.5 bits (68), Expect = 0.51
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -2
Query: 380 RSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHSFVTVPTT 231
R+ +S L+ S+N ++QNA T+FF + K H + Y TT
Sbjct: 16 RANESTLLTSENNDIANQNADTAFFTSKKKRHNNNSYTASDQDAYLQHTT 65
>SB_48685| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 246
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 373 VLRLARRQYWYKVSEMLVRQCVTLALLQEHRALTLNPMFAPRDMKSK 513
V+R R+ W K +++V CV LA++ L + +F R +S+
Sbjct: 34 VIRNVHREGWQKSRDLIVLNCVLLAVIMLCAMLLIAVIFCRRAPRSR 80
>SB_24186| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 246
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 373 VLRLARRQYWYKVSEMLVRQCVTLALLQEHRALTLNPMFAPRDMKSK 513
V+R R+ W K +++V CV LA++ L + +F R +S+
Sbjct: 34 VIRNVHREGWQKSRDLIVLNCVLLAVIMLCAMLLIAVIFCRRAPRSR 80
>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1202
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 339 GEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRS 470
GE+++ D++ +A + Q N EA R F P PG P S
Sbjct: 614 GEMMSDDEMKPKARCKRSQSTPIHQENREEAHRPFTPQPGRPLS 657
>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 173
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 283 RWLLFMLPKKLVHAFWLLEEKFLLLISWLFVLRLARRQYW 402
RWL ++ + L H WL ++L +SWL+ +R W
Sbjct: 19 RWLNYV--RWLYHVRWLYHVRWLYHVSWLYHVRWLYHVRW 56
>SB_32577| Best HMM Match : PH (HMM E-Value=7e-17)
Length = 1248
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 423 REAVRHFGPAPGAPRSHTKPYVRTKGHEKQGPVVV 527
++AV+ PAP APR P V+ G ++ PV++
Sbjct: 978 KDAVKPSRPAPPAPRRPPPPAVKQDGEKEVLPVLL 1012
>SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1207
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +3
Query: 327 LAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFG 446
LA G T PT +T+ + GQ R A+R FG
Sbjct: 856 LATSGNTSTTISDNTATPTSSRTMQIPGQTQGRVALREFG 895
>SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 785
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -1
Query: 237 HYHGNQTLTSWLLHVARQTRHRDWW 163
HYH N+ L +L ++R WW
Sbjct: 342 HYHSNEVLKDYLEMLSRTGPRHGWW 366
>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -2
Query: 458 SWSRAKVTHCLTSISLTLYQY 396
+W RAKV HC +S S+T+ QY
Sbjct: 2539 TWYRAKVLHCDSSFSITV-QY 2558
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,095,293
Number of Sequences: 59808
Number of extensions: 409806
Number of successful extensions: 1115
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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