Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40266
(573 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18 pro... 114 2e-25
DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18 p... 114 2e-25
BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18 p... 114 2e-25
BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18 p... 114 2e-25
BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18 p... 114 2e-25
AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18 p... 114 2e-25
AK000286-1|BAA91055.1| 308|Homo sapiens protein ( Homo sapiens ... 30 6.7
BC117263-1|AAI17264.1| 1069|Homo sapiens SLC24A1 protein protein. 29 8.8
AF062922-1|AAC77912.1| 1099|Homo sapiens retinal rod Na-Ca+K exc... 29 8.8
AF062921-1|AAC16732.1| 1099|Homo sapiens retinal rod Na-Ca+K exc... 29 8.8
AF026132-1|AAB97832.1| 1081|Homo sapiens retinal rod Na+/Ca+, K+... 29 8.8
AB014602-1|BAA31677.2| 988|Homo sapiens KIAA0702 protein protein. 29 8.8
>L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 114 bits (275), Expect = 2e-25
Identities = 53/84 (63%), Positives = 64/84 (76%)
Frame = +3
Query: 255 VRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAV 434
VR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R RE
Sbjct: 90 VRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVY 149
Query: 435 RHFGPAPGAPRSHTKPYVRTKGHE 506
RHFG APG P SHTKPYVR+KG +
Sbjct: 150 RHFGKAPGTPHSHTKPYVRSKGRK 173
Score = 91.1 bits (216), Expect = 3e-18
Identities = 46/85 (54%), Positives = 55/85 (64%)
Frame = +1
Query: 1 INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVS 180
I H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+S+S
Sbjct: 5 IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLS 64
Query: 181 RLARHM*KPTREGLIAVVVGTVTNE 255
R+ R M P RE AVVVGT+T++
Sbjct: 65 RMIRKMKLPGRENKTAVVVGTITDD 89
>DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18
protein.
Length = 164
Score = 114 bits (275), Expect = 2e-25
Identities = 53/84 (63%), Positives = 64/84 (76%)
Frame = +3
Query: 255 VRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAV 434
VR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R RE
Sbjct: 67 VRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVY 126
Query: 435 RHFGPAPGAPRSHTKPYVRTKGHE 506
RHFG APG P SHTKPYVR+KG +
Sbjct: 127 RHFGKAPGTPHSHTKPYVRSKGRK 150
Score = 70.1 bits (164), Expect = 5e-12
Identities = 32/51 (62%), Positives = 41/51 (80%)
Frame = +1
Query: 103 TNAKFNQIVLRRLFMSRINRPPISVSRLARHM*KPTREGLIAVVVGTVTNE 255
TN+ FNQ+VL+RLFMSR NRPP+S+SR+ R M P RE AVVVGT+T++
Sbjct: 16 TNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDD 66
>BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 114 bits (275), Expect = 2e-25
Identities = 53/84 (63%), Positives = 64/84 (76%)
Frame = +3
Query: 255 VRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAV 434
VR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R RE
Sbjct: 90 VRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVY 149
Query: 435 RHFGPAPGAPRSHTKPYVRTKGHE 506
RHFG APG P SHTKPYVR+KG +
Sbjct: 150 RHFGKAPGTPHSHTKPYVRSKGRK 173
Score = 89.0 bits (211), Expect = 1e-17
Identities = 45/85 (52%), Positives = 54/85 (63%)
Frame = +1
Query: 1 INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVS 180
I H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+ +S
Sbjct: 5 IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLCLS 64
Query: 181 RLARHM*KPTREGLIAVVVGTVTNE 255
R+ R M P RE AVVVGT+T++
Sbjct: 65 RMIRKMKLPGRENKTAVVVGTITDD 89
>BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 114 bits (275), Expect = 2e-25
Identities = 53/84 (63%), Positives = 64/84 (76%)
Frame = +3
Query: 255 VRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAV 434
VR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R RE
Sbjct: 90 VRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVY 149
Query: 435 RHFGPAPGAPRSHTKPYVRTKGHE 506
RHFG APG P SHTKPYVR+KG +
Sbjct: 150 RHFGKAPGTPHSHTKPYVRSKGRK 173
Score = 91.1 bits (216), Expect = 3e-18
Identities = 46/85 (54%), Positives = 55/85 (64%)
Frame = +1
Query: 1 INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVS 180
I H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+S+S
Sbjct: 5 IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLS 64
Query: 181 RLARHM*KPTREGLIAVVVGTVTNE 255
R+ R M P RE AVVVGT+T++
Sbjct: 65 RMIRKMKLPGRENKTAVVVGTITDD 89
>BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 114 bits (275), Expect = 2e-25
Identities = 53/84 (63%), Positives = 64/84 (76%)
Frame = +3
Query: 255 VRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAV 434
VR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R RE
Sbjct: 90 VRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVY 149
Query: 435 RHFGPAPGAPRSHTKPYVRTKGHE 506
RHFG APG P SHTKPYVR+KG +
Sbjct: 150 RHFGKAPGTPHSHTKPYVRSKGRK 173
Score = 91.1 bits (216), Expect = 3e-18
Identities = 46/85 (54%), Positives = 55/85 (64%)
Frame = +1
Query: 1 INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVS 180
I H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+S+S
Sbjct: 5 IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLS 64
Query: 181 RLARHM*KPTREGLIAVVVGTVTNE 255
R+ R M P RE AVVVGT+T++
Sbjct: 65 RMIRKMKLPGRENKTAVVVGTITDD 89
>AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 114 bits (275), Expect = 2e-25
Identities = 53/84 (63%), Positives = 64/84 (76%)
Frame = +3
Query: 255 VRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAV 434
VR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R RE
Sbjct: 90 VRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVY 149
Query: 435 RHFGPAPGAPRSHTKPYVRTKGHE 506
RHFG APG P SHTKPYVR+KG +
Sbjct: 150 RHFGKAPGTPHSHTKPYVRSKGRK 173
Score = 91.1 bits (216), Expect = 3e-18
Identities = 46/85 (54%), Positives = 55/85 (64%)
Frame = +1
Query: 1 INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVS 180
I H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+S+S
Sbjct: 5 IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLS 64
Query: 181 RLARHM*KPTREGLIAVVVGTVTNE 255
R+ R M P RE AVVVGT+T++
Sbjct: 65 RMIRKMKLPGRENKTAVVVGTITDD 89
>AK000286-1|BAA91055.1| 308|Homo sapiens protein ( Homo sapiens
cDNA FLJ20279 fis, clone HEP03229. ).
Length = 308
Score = 29.9 bits (64), Expect = 6.7
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 370 FVLRLARRQYWYKVSEMLVRQCVTLALLQEH-RALTLNPMFAPRDMKSK 513
FV+ L + +WY V ++ C+ + L H R + +P P+ +K
Sbjct: 67 FVMLLPSKDFWYSVVNGVIFNCLAVLALSSHLRTMLTDPGAVPKGNATK 115
>BC117263-1|AAI17264.1| 1069|Homo sapiens SLC24A1 protein protein.
Length = 1069
Score = 29.5 bits (63), Expect = 8.8
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +3
Query: 270 IPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGP 449
+PK T + T K AAG E D PT +T+ ++R+ V+ + P
Sbjct: 114 MPKRTAKMIPTTTKNNYSPTAAGTERRKED-----TPTSSRTLTYYTSTSSRQIVKKYTP 168
Query: 450 AP-GAPRSHTKPYVRTK 497
P G +S++ VR K
Sbjct: 169 TPRGEMKSYSPTQVREK 185
>AF062922-1|AAC77912.1| 1099|Homo sapiens retinal rod Na-Ca+K
exchanger protein.
Length = 1099
Score = 29.5 bits (63), Expect = 8.8
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +3
Query: 270 IPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGP 449
+PK T + T K AAG E D PT +T+ ++R+ V+ + P
Sbjct: 114 MPKRTAKMIPTTTKNNYSPTAAGTERRKED-----TPTSSRTLTYYTSTSSRQIVKKYTP 168
Query: 450 AP-GAPRSHTKPYVRTK 497
P G +S++ VR K
Sbjct: 169 TPRGEMKSYSPTQVREK 185
>AF062921-1|AAC16732.1| 1099|Homo sapiens retinal rod Na-Ca+K
exchanger splice variant protein.
Length = 1099
Score = 29.5 bits (63), Expect = 8.8
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +3
Query: 270 IPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGP 449
+PK T + T K AAG E D PT +T+ ++R+ V+ + P
Sbjct: 114 MPKRTAKMIPTTTKNNYSPTAAGTERRKED-----TPTSSRTLTYYTSTSSRQIVKKYTP 168
Query: 450 AP-GAPRSHTKPYVRTK 497
P G +S++ VR K
Sbjct: 169 TPRGEMKSYSPTQVREK 185
>AF026132-1|AAB97832.1| 1081|Homo sapiens retinal rod Na+/Ca+, K+
exchanger protein.
Length = 1081
Score = 29.5 bits (63), Expect = 8.8
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +3
Query: 270 IPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGP 449
+PK T + T K AAG E D PT +T+ ++R+ V+ + P
Sbjct: 114 MPKRTAKMIPTTTKNNYSPTAAGTERRKED-----TPTSSRTLTYYTSTSSRQIVKKYTP 168
Query: 450 AP-GAPRSHTKPYVRTK 497
P G +S++ VR K
Sbjct: 169 TPRGEMKSYSPTQVREK 185
>AB014602-1|BAA31677.2| 988|Homo sapiens KIAA0702 protein protein.
Length = 988
Score = 29.5 bits (63), Expect = 8.8
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +3
Query: 270 IPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGP 449
+PK T + T K AAG E D PT +T+ ++R+ V+ + P
Sbjct: 117 MPKRTAKMIPTTTKNNYSPTAAGTERRKED-----TPTSSRTLTYYTSTSSRQIVKKYTP 171
Query: 450 AP-GAPRSHTKPYVRTK 497
P G +S++ VR K
Sbjct: 172 TPRGEMKSYSPTQVREK 188
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,779,313
Number of Sequences: 237096
Number of extensions: 2111202
Number of successful extensions: 4568
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4566
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5872755824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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