Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40266
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical ...   133   7e-32
U40415-6|AAP68933.1|  329|Caenorhabditis elegans Homolog of yeas...    29   3.1  
Z81466-3|CAB03867.1|  593|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U41556-9|AAK39192.1|  692|Caenorhabditis elegans Potassium chann...    28   5.4  
U41556-8|AAM51518.1|  740|Caenorhabditis elegans Potassium chann...    28   5.4  
AY572974-1|AAT77227.1|  692|Caenorhabditis elegans KQT-1 potassi...    28   5.4  
AL110485-25|CAB60373.1|  672|Caenorhabditis elegans Hypothetical...    28   5.4  

>AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical
           protein Y45F10D.12 protein.
          Length = 188

 Score =  133 bits (322), Expect = 7e-32
 Identities = 60/83 (72%), Positives = 72/83 (86%)
 Frame = +3

Query: 258 RLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVR 437
           RLY +PK++VAALHVTE ARARILAAGGEI+T DQLAL++P G+ TV +QG R+AREA +
Sbjct: 91  RLYTVPKISVAALHVTEGARARILAAGGEIITLDQLALKSPKGENTVFLQGPRSAREAEK 150

Query: 438 HFGPAPGAPRSHTKPYVRTKGHE 506
           HFGPAPG P SHTKPYVR+KG +
Sbjct: 151 HFGPAPGVPHSHTKPYVRSKGRK 173



 Score = 67.7 bits (158), Expect = 5e-12
 Identities = 37/85 (43%), Positives = 48/85 (56%)
 Frame = +1

Query: 1   INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVS 180
           INHKHDR  RRT  KS++                T  KFN IVL+RL MSR NR P+S++
Sbjct: 5   INHKHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQPLSLA 64

Query: 181 RLARHM*KPTREGLIAVVVGTVTNE 255
           +LAR + K   E    V + TVT++
Sbjct: 65  KLARAVQKAGNENKTVVTLSTVTDD 89


>U40415-6|AAP68933.1|  329|Caenorhabditis elegans Homolog of yeast
           longevity geneprotein 2 protein.
          Length = 329

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +1

Query: 286 WLLFMLPKKLVHAFWLLEEKFLLLISWLFVLRLARRQYWYKVSEMLVRQCVTLALL 453
           W    +P  +   +W+    ++ L+  +  L   R  +W    +MLV   +TLAL+
Sbjct: 125 WPFHPIPNAVAWYYWIQGGFYIALVFGILFLDAKRSDFW----QMLVHHFITLALI 176


>Z81466-3|CAB03867.1|  593|Caenorhabditis elegans Hypothetical
           protein C09H6.3 protein.
          Length = 593

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -2

Query: 512 LLFMSLGANIGFS-VRARCSWSRAKVTHCLTSISLTLYQYCLLAS-RSTKSQLIK 354
           LL +SL  ++    VR    WS+    H +   S +LY+  LLA+    KS+L+K
Sbjct: 490 LLLLSLVTDVDEKGVRPTVDWSKKSHDHVVILFSHSLYEKILLAAGYDPKSELMK 544


>U41556-9|AAK39192.1|  692|Caenorhabditis elegans Potassium channel,
           kvqlt familyprotein 1, isoform a protein.
          Length = 692

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 77  SFTDTWPDVQMPNSIRSFYAGSL*AVSTGHQSLCLVWRATCRSQ 208
           S   T PD ++  +I  +Y   +  +    + +C VW A CRS+
Sbjct: 119 SVFSTMPDFEVNATIVLYYLEIVFVIWLATEYICRVWSAGCRSR 162


>U41556-8|AAM51518.1|  740|Caenorhabditis elegans Potassium channel,
           kvqlt familyprotein 1, isoform b protein.
          Length = 740

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 77  SFTDTWPDVQMPNSIRSFYAGSL*AVSTGHQSLCLVWRATCRSQ 208
           S   T PD ++  +I  +Y   +  +    + +C VW A CRS+
Sbjct: 167 SVFSTMPDFEVNATIVLYYLEIVFVIWLATEYICRVWSAGCRSR 210


>AY572974-1|AAT77227.1|  692|Caenorhabditis elegans KQT-1 potassium
           channel protein.
          Length = 692

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 77  SFTDTWPDVQMPNSIRSFYAGSL*AVSTGHQSLCLVWRATCRSQ 208
           S   T PD ++  +I  +Y   +  +    + +C VW A CRS+
Sbjct: 119 SVFSTMPDFEVNATIVLYYLEIVFVIWLATEYICRVWSAGCRSR 162


>AL110485-25|CAB60373.1|  672|Caenorhabditis elegans Hypothetical
           protein Y46G5A.31 protein.
          Length = 672

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 135 PALYEPYQPATNLCVSFGAPHVEANS*GFDC 227
           P+ YEP+      C   G P V  N  GF C
Sbjct: 527 PSYYEPWGYTPAECTVMGIPSVSTNLSGFGC 557


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,968,468
Number of Sequences: 27780
Number of extensions: 310985
Number of successful extensions: 846
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)