Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40266
(573 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) simi... 124 6e-29
At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S ... 122 2e-28
At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A) 112 2e-25
At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to hom... 31 0.41
At2g02640.1 68415.m00203 DC1 domain-containing protein contain... 31 0.55
At3g28360.1 68416.m03544 ABC transporter family protein similar ... 29 1.7
At3g28415.1 68416.m03551 P-glycoprotein, putative contains ATP-b... 28 3.8
At3g28390.1 68416.m03547 P-glycoprotein, putative similar to P-g... 28 3.8
At2g29125.1 68415.m03540 expressed protein 28 3.8
At1g31430.1 68414.m03849 pentatricopeptide (PPR) repeat-containi... 28 3.8
At1g05440.1 68414.m00552 expressed protein ; expression supporte... 28 3.8
At1g32190.1 68414.m03959 expressed protein 27 6.7
At3g28380.1 68416.m03546 P-glycoprotein, putative similar to P-g... 27 8.9
At3g28345.1 68416.m03541 ABC transporter family protein similar ... 27 8.9
>At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) similar
to GB:P42791
Length = 187
Score = 124 bits (298), Expect = 6e-29
Identities = 56/84 (66%), Positives = 69/84 (82%)
Frame = +3
Query: 255 VRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAV 434
+R+++IP M V AL TE+ARARI AGGE LTFDQLALRAP G+ TVL++G +N+REAV
Sbjct: 89 LRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAV 148
Query: 435 RHFGPAPGAPRSHTKPYVRTKGHE 506
+HFGPAPG P SH+KPYVR KG +
Sbjct: 149 KHFGPAPGVPHSHSKPYVRAKGRK 172
Score = 65.3 bits (152), Expect = 3e-11
Identities = 32/79 (40%), Positives = 49/79 (62%)
Frame = +1
Query: 19 RKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHM 198
+K +RT KS D+ TN+KFN ++L+RLFMS++N+ P+S+SRL M
Sbjct: 12 KKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVEFM 71
Query: 199 *KPTREGLIAVVVGTVTNE 255
+E IAV+VGT+T++
Sbjct: 72 --TGKEDKIAVLVGTITDD 88
>At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S
ribosomal protein L18, Arabidopsis thaliana,
SWISSPROT:RL18_ARATH
Length = 187
Score = 122 bits (293), Expect = 2e-28
Identities = 56/84 (66%), Positives = 69/84 (82%)
Frame = +3
Query: 255 VRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAV 434
+R+++IP M V AL TE+ARARI AGGE LTFDQLALRAP G+ TVL++G +N+REAV
Sbjct: 89 LRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAV 148
Query: 435 RHFGPAPGAPRSHTKPYVRTKGHE 506
+HFGPAPG P S+TKPYVR KG +
Sbjct: 149 KHFGPAPGVPHSNTKPYVRHKGRK 172
Score = 60.9 bits (141), Expect = 6e-10
Identities = 29/79 (36%), Positives = 48/79 (60%)
Frame = +1
Query: 19 RKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHM 198
+K +RT KS D+ +N+ FN ++L+RLFMS++N+ P+S+SRL M
Sbjct: 12 KKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAPLSLSRLVEFM 71
Query: 199 *KPTREGLIAVVVGTVTNE 255
++ IAV+VGT+T++
Sbjct: 72 --TGKDDKIAVLVGTITDD 88
>At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A)
Length = 135
Score = 112 bits (269), Expect = 2e-25
Identities = 54/83 (65%), Positives = 62/83 (74%), Gaps = 1/83 (1%)
Frame = +3
Query: 255 VRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPT-GKKTVLVQGQRNAREA 431
VR+ +P +TV AL TE ARARI AGGE LTFDQLAL PT + TVL++G +N REA
Sbjct: 36 VRIEDVPALTVTALRFTESARARIHKAGGECLTFDQLALPCPTWSENTVLLRGPKNTREA 95
Query: 432 VRHFGPAPGAPRSHTKPYVRTKG 500
V+HFGPAPG P SHTKPYVR G
Sbjct: 96 VKHFGPAPGVPHSHTKPYVRQTG 118
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/37 (51%), Positives = 30/37 (81%)
Frame = +1
Query: 145 MSRINRPPISVSRLARHM*KPTREGLIAVVVGTVTNE 255
MS++N+ P+S+SRL R+M ++G IAV+VGTVT++
Sbjct: 1 MSKVNKAPLSLSRLVRYM--DGKDGKIAVIVGTVTDD 35
>At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to
homeodomain transcription factor (AGL30) GI:3461830 from
[Arabidopsis thaliana]; contains Pfam domain PF00319:
SRF-type transcription factor (DNA-binding and
dimerisation domain); PMID: 12837945
Length = 389
Score = 31.5 bits (68), Expect = 0.41
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -1
Query: 447 GQSDALPHEHFADLVPVLSSCQSEHEEPADQ 355
G S LPH +PV SSC E +P DQ
Sbjct: 223 GDSSFLPHREMDGSIPVYSSCFFESTKPEDQ 253
>At2g02640.1 68415.m00203 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 627
Score = 31.1 bits (67), Expect = 0.55
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 290 CSSCYRKSSCTHFGCWRRNSYF 355
CS+C RKS+ + C+ RN YF
Sbjct: 423 CSACMRKSNGFGYSCYNRNCYF 444
>At3g28360.1 68416.m03544 ABC transporter family protein similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1158
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 342 EILTFDQLALRAPTGKKTVLVQGQRNAREAV 434
E L FD L L+ P+GK LV G + + V
Sbjct: 290 ETLIFDDLCLKIPSGKTVALVGGSGSGKSTV 320
>At3g28415.1 68416.m03551 P-glycoprotein, putative contains
ATP-binding cassette; related to multi drug resistance
proteins
Length = 1221
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 354 FDQLALRAPTGKKTVLVQGQRNAREAV 434
FD L LR P+GK LV G + + V
Sbjct: 356 FDDLCLRIPSGKSVALVGGSGSGKSTV 382
>At3g28390.1 68416.m03547 P-glycoprotein, putative similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1225
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 354 FDQLALRAPTGKKTVLVQGQRNAREAV 434
FD L LR P+GK LV G + + V
Sbjct: 365 FDDLCLRVPSGKTVALVGGSGSGKSTV 391
>At2g29125.1 68415.m03540 expressed protein
Length = 115
Score = 28.3 bits (60), Expect = 3.8
Identities = 24/93 (25%), Positives = 41/93 (44%)
Frame = -2
Query: 467 ARCSWSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSS 288
A S S++K + ++ + + + S STK + S + SSSS + SF S
Sbjct: 14 ASSSSSKSKFSRSFSTSASSTKSPIFVRSSSTKCSVPSSSSSSSSSSSISRSF------S 67
Query: 287 HRHLRYLVQSHSFVTVPTTTAIKPSRVGFYMWR 189
+ R S S +T ++ K + FY+ R
Sbjct: 68 RKERRSSSSSSSSITQKYSSLAKEQKARFYIMR 100
>At1g31430.1 68414.m03849 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 570
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -1
Query: 345 FLLQQPKCVHELFR*HEEQPPSSSVSCTVSLIC 247
F+ + K H + H QP S SC + L+C
Sbjct: 395 FVAEGRKIFHSMTERHNVQPKSEHCSCLIDLLC 427
>At1g05440.1 68414.m00552 expressed protein ; expression supported
by MPSS
Length = 393
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -2
Query: 431 CLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSF 309
CL S++ TL L +S+ ++L + NF S+ ++ TSF
Sbjct: 71 CLDSLNATLDLMPLSVQKSSLTKLSSASNFKSTVESTPTSF 111
>At1g32190.1 68414.m03959 expressed protein
Length = 422
Score = 27.5 bits (58), Expect = 6.7
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +2
Query: 290 CSSCYRKSSCTHFGCWR 340
CSSC+ K C CW+
Sbjct: 359 CSSCFGKPKCPKCSCWK 375
>At3g28380.1 68416.m03546 P-glycoprotein, putative similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1240
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 342 EILTFDQLALRAPTGKKTVLVQGQRNAREAV 434
E FD L L+ P GK LV G + + V
Sbjct: 373 ETTIFDDLCLKIPAGKTVALVGGSGSGKSTV 403
>At3g28345.1 68416.m03541 ABC transporter family protein similar to
P-glycoprotein [Arabidopsis thaliana] GI:3849833;
contains Pfam profiles PF00005: ABC transporter,
PF00664: ABC transporter transmembrane region
Length = 1240
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 342 EILTFDQLALRAPTGKKTVLVQGQRNAREAV 434
E FD LR P+GK LV G + + V
Sbjct: 373 ETSIFDDFCLRVPSGKTVALVGGSGSGKSTV 403
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,152,652
Number of Sequences: 28952
Number of extensions: 285673
Number of successful extensions: 759
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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