Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40264
         (647 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   0.71 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      25   0.71 
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    22   5.0  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    22   5.0  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   5.0  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   6.6  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   8.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.7  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +1

Query: 280 HYGFVAPALSNPIPDSVG-AYPPAKPFTPPGVYPHP 384
           H G     L +    S+G   PP  PF P G YP+P
Sbjct: 141 HMGIPPYQLDSKTAGSMGLTRPPMYPF-PAGQYPYP 175


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +1

Query: 280 HYGFVAPALSNPIPDSVG-AYPPAKPFTPPGVYPHP 384
           H G     L +    S+G   PP  PF P G YP+P
Sbjct: 33  HMGIPPYQLDSKTAGSMGLTRPPMYPF-PAGQYPYP 67


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 482 YRTNHFNMFNCNKIVTTRVTYT 547
           Y+TN F   +C+K   T   YT
Sbjct: 19  YKTNPFLASDCDKNQNTEQNYT 40


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 482 YRTNHFNMFNCNKIVTTRVTYT 547
           Y+TN F   +C+K   T   YT
Sbjct: 19  YKTNPFLASDCDKNQNTEQNYT 40


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 81  LK*TKYCTFLV-FFIKLGVIQFLFI*LKKVLN 173
           LK  KYC F++ F++ + VI   +  L +  N
Sbjct: 316 LKTNKYCNFIILFYLSVFVILVYYASLDETPN 347


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 482 YRTNHFNMFNCNKIVTTRVTYT 547
           Y+TN F   +C+K   T   YT
Sbjct: 19  YKTNPFLASDCDKNQNTEHNYT 40


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 641 SSSTGSNPGSIVNK 600
           +S+T  NPG+ +NK
Sbjct: 277 NSNTNYNPGTYINK 290


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 105  FLVFFIKLGVIQF 143
            FL+FF  L VIQF
Sbjct: 1287 FLIFFALLMVIQF 1299


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 105  FLVFFIKLGVIQF 143
            FL+FF  L VIQF
Sbjct: 1287 FLIFFALLMVIQF 1299


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,884
Number of Sequences: 336
Number of extensions: 3194
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)