Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40264
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    31   0.19 
SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces pom...    26   4.1  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    25   7.1  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   9.4  
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    25   9.4  

>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 298 PALSNPIPDSVGAYPPAKPFTPPGVYPHP 384
           P++SNP  D+V +  P  P  P  V PHP
Sbjct: 132 PSISNPPVDTVISDSPTSPHPPSFVQPHP 160


>SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 341 GYAPTESGIGLLSAGATKP*CVVPTTDEYVVEDR 240
           G  P+E+G   +  G TK  C+V    E V++ +
Sbjct: 30  GIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSK 63


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 559 HTFNCWVDLLDHYSLFTMLPGFDPVLL 639
           HTF+ W  L  H+  F    G DP +L
Sbjct: 290 HTFSEWRALFMHFFPFINSEGVDPAIL 316


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 313 PIPDSVGAYPPAKPFTPPGVYPHP 384
           P P S+ +   A PF P  V P P
Sbjct: 472 PPPSSINSNRAASPFRPTSVSPQP 495


>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 461 CSSKRYGYRTNHFNMFNCNK 520
           C+++ +GY  N    FNC+K
Sbjct: 146 CTAESWGYHGNSGEKFNCSK 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,445,846
Number of Sequences: 5004
Number of extensions: 45681
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)