Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40264
(647 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0829 + 7674416-7674471,7675043-7675129,7675210-7675250,767... 31 1.0
09_06_0099 - 20854828-20855117,20855231-20855423,20855507-208556... 29 3.2
06_01_0771 - 5768086-5768090,5768905-5769156,5769282-5769660 29 3.2
01_07_0276 - 42435975-42436301 29 3.2
01_06_1678 - 39095986-39096205,39096400-39096477,39096578-390969... 26 3.7
03_01_0164 - 1326002-1326409,1326410-1326428,1326523-1326647,132... 29 4.2
06_01_0486 - 3455030-3455770 28 5.6
05_01_0142 - 940421-940701,941262-941574 28 5.6
12_01_0800 - 7331444-7331539,7331617-7331742,7331830-7331907,733... 28 7.4
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 28 7.4
02_01_0522 + 3779404-3779439,3779594-3779709,3780120-3780327,378... 28 7.4
01_07_0082 - 40965947-40967023 28 7.4
07_03_0115 - 13574601-13574645,13574710-13574781,13575990-13576469 27 9.7
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 27 9.7
>12_01_0829 +
7674416-7674471,7675043-7675129,7675210-7675250,
7675433-7675755
Length = 168
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -3
Query: 390 HFGMGVNSWRSKWFSRWICSYR-IRDRIT*CRSHKAI 283
H G+GV +WRS W R + R RD + C H+ +
Sbjct: 118 HHGVGVGAWRSCWHPRRVDVLRDRRDDLRACELHRLV 154
>09_06_0099 -
20854828-20855117,20855231-20855423,20855507-20855668,
20856384-20856497
Length = 252
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -3
Query: 378 GVNSWRSKWFSRWICS 331
GVNSW+S+W S +CS
Sbjct: 114 GVNSWKSEWNSYGVCS 129
>06_01_0771 - 5768086-5768090,5768905-5769156,5769282-5769660
Length = 211
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 581 ICLITIVCSLCCLGLIPYCLIH 646
+ + +VCSL GL+ YCL H
Sbjct: 161 VIIAIVVCSLAAAGLLGYCLYH 182
>01_07_0276 - 42435975-42436301
Length = 108
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 110 RFFHKTGSHSVFIHLIEESVKLTKNFCCTGIIMSTHQGPSAPLDD 244
R H G+ +VF+ ++ V L+ FCC G++ G S PL++
Sbjct: 51 RSHHGHGALAVFLLVLSVFVFLSVCFCCIGLVQLAIHG-SLPLEE 94
>01_06_1678 -
39095986-39096205,39096400-39096477,39096578-39096949,
39097374-39097671,39097867-39098077,39098331-39099023
Length = 623
Score = 26.2 bits (55), Expect(2) = 3.7
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 295 APALSNPIPDSVGAYPPAKPFTPP 366
AP +P+P+ + +PP P PP
Sbjct: 69 APPTPSPVPEHLHHHPPPPPPVPP 92
Score = 21.0 bits (42), Expect(2) = 3.7
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = +1
Query: 340 PPAKPFTPPGVYPHP 384
PP P PP PHP
Sbjct: 124 PPHPPEDPPPHPPHP 138
>03_01_0164 -
1326002-1326409,1326410-1326428,1326523-1326647,
1327482-1327530,1328834-1328855,1328969-1329071
Length = 241
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 331 GAYPPAKPFTPPGVYP 378
GAYPP + PPG YP
Sbjct: 212 GAYPPPGSYPPPGSYP 227
>06_01_0486 - 3455030-3455770
Length = 246
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Frame = +1
Query: 289 FVAPALSNPIPDSVGAY--PPAKPFTPPGVYPHP 384
+V P + P P V Y PP P+ PP P P
Sbjct: 99 YVPPYIPPPTPPYVPPYIPPPTPPYVPPPTPPSP 132
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +1
Query: 319 PDSVGAYPPAKPFTPPGVYPHP 384
P GAYPP + PG YP P
Sbjct: 62 PPPPGAYPPQHGYPQPGGYPPP 83
>12_01_0800 -
7331444-7331539,7331617-7331742,7331830-7331907,
7332515-7332747,7332832-7332871,7333016-7333070,
7333158-7333345,7333416-7333475,7333686-7333769,
7334817-7334903,7335178-7335246,7335354-7335410
Length = 390
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 307 SNPIPDSVGAYPPAKPFTPPGVYPHPEV 390
+ P+ G PP PPGVY HP +
Sbjct: 70 AQPMIPPYGTPPPPYVMYPPGVYAHPSM 97
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +1
Query: 295 APALSNPIPDSVGAYPPAKPFTPPGVYP 378
AP + P P V PP P PPG P
Sbjct: 461 APGQATPPPYGVQYAPPPAPIPPPGTAP 488
>02_01_0522 +
3779404-3779439,3779594-3779709,3780120-3780327,
3781446-3781611,3781713-3781842,3782496-3782619,
3782794-3782844,3783140-3783262,3783504-3783602,
3783680-3783790,3783868-3783957,3784035-3784175,
3787913-3788116,3788154-3788290,3788429-3788662,
3789535-3789829,3789963-3790017,3790144-3790245,
3790581-3790669,3790807-3790899
Length = 867
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +2
Query: 14 CLLSIVRRVIVGFTAKEKLIN*SKVN*ILHLSRFFHKTGSHSVFIHLIEESVKLTKN 184
CLL ++RR +V F + LIN K+ +L + F +++HLI++ + N
Sbjct: 534 CLLCMIRRSVVLFCVIQNLINCLKIGCLL---KPFKGRFIPPIWMHLIKDVISYMSN 587
>01_07_0082 - 40965947-40967023
Length = 358
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +1
Query: 283 YGFVAPALSNP-IPDSVGAYPPAKPFTPPGVYP 378
YG PA + P + AYPP + PP YP
Sbjct: 151 YGQAPPAPAYPPSAAAAAAYPPQSTYPPPTAYP 183
>07_03_0115 - 13574601-13574645,13574710-13574781,13575990-13576469
Length = 198
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = -1
Query: 386 SGWG*TPGGVNGLAGGYAPTESGIGLLSAGATKP*CVVPTTDEYVV 249
SG G PGGV G GG+ E +GA + +T E V
Sbjct: 91 SGAGRVPGGVAGDGGGWPAREGHPATAESGAARRGAAEDSTGEVAV 136
>03_03_0008 - 13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 304 LSNPIPDSVGAYPPAKPFTPPGVYPHP 384
L P+PD PP P +PP V P P
Sbjct: 1114 LGPPLPDDRPPSPPPLPSSPPPVPPPP 1140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,689,131
Number of Sequences: 37544
Number of extensions: 307682
Number of successful extensions: 1019
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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