Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40264
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3426| Best HMM Match : Homeobox (HMM E-Value=3.4e-22)               30   1.9  
SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)                29   3.3  
SB_51587| Best HMM Match : F5_F8_type_C (HMM E-Value=2.6e-37)          29   4.3  
SB_32452| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_51134| Best HMM Match : Fibrinogen_C (HMM E-Value=3.1e-09)          28   7.5  
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)            28   7.5  

>SB_3426| Best HMM Match : Homeobox (HMM E-Value=3.4e-22)
          Length = 245

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 283 YGFVAPALSNPIPDSVGAYPPAKPFTPPGVYP 378
           Y F  P    P P    A+PP+ PF+PP  YP
Sbjct: 181 YPFQYPG--TPPPPMYPAFPPSFPFSPPPEYP 210


>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
          Length = 1188

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 307 SNPIPDSVGAYPPAKPFTPPGVYPHPE 387
           ++PIP S   Y P  P  PP V+P  E
Sbjct: 666 TSPIPPSAPTYGPTPPPLPPRVHPRVE 692


>SB_51587| Best HMM Match : F5_F8_type_C (HMM E-Value=2.6e-37)
          Length = 404

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +2

Query: 107 SRFFHKTGSHSVFI--HLIEESVKLTKNFCC 193
           SRFF+ T SH +++    I ++V++T NF C
Sbjct: 131 SRFFYPTESHKLYVGGQGILKTVQVTDNFAC 161


>SB_32452| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 680

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +1

Query: 280 HYG-FVAPALSNPIPDSVGAYPPAKPFTPPGVYPHPEV 390
           H G  V P+  +   DS G  PP     PPG  P P++
Sbjct: 614 HKGSIVCPSCQDICYDSPGICPPVVVPAPPGTQPQPKI 651


>SB_51134| Best HMM Match : Fibrinogen_C (HMM E-Value=3.1e-09)
          Length = 382

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -1

Query: 143 KLNDSQFYEKNEKGAVFSSL 84
           KLND + YEK+E   VFS+L
Sbjct: 176 KLNDGEEYEKDESYVVFSTL 195


>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
          Length = 496

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 298 PALSNPIPDSVGAYPPAKPFTPPGVYPHPE 387
           P L    P S   YPP+ P  PP ++ +P+
Sbjct: 286 PTLPPRYPPSPPRYPPSPPRYPPSLHRYPQ 315


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,229,439
Number of Sequences: 59808
Number of extensions: 353545
Number of successful extensions: 1116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)