Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40264
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032627-8|CAB63354.2|  373|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z82051-10|CAB04822.2|  577|Caenorhabditis elegans Hypothetical p...    27   8.7  
AL021175-11|CAA15973.2|  577|Caenorhabditis elegans Hypothetical...    27   8.7  

>AL032627-8|CAB63354.2|  373|Caenorhabditis elegans Hypothetical
           protein Y41C4A.5 protein.
          Length = 373

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 298 PALSNPIPDSVGAYPPAKPFTPPGVYPHP 384
           P    P+P   G YPP  P+ PPG YP+P
Sbjct: 287 PQYPYPVPPH-GYYPPGYPY-PPG-YPYP 312


>Z82051-10|CAB04822.2|  577|Caenorhabditis elegans Hypothetical
           protein T23D5.2 protein.
          Length = 577

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +2

Query: 506 FNCNKIVTTRVTYTTAWHTHLIAGS----ICLITIVC-SLCCLGLIPYCLIH 646
           F C  +    + Y TA+H   I G+    I L +++C S  CL ++ +  +H
Sbjct: 22  FVCTCLFNAILIYLTAFHVEKITGAYKHLIILFSLICMSFSCLEVLAHPYLH 73


>AL021175-11|CAA15973.2|  577|Caenorhabditis elegans Hypothetical
           protein T23D5.2 protein.
          Length = 577

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +2

Query: 506 FNCNKIVTTRVTYTTAWHTHLIAGS----ICLITIVC-SLCCLGLIPYCLIH 646
           F C  +    + Y TA+H   I G+    I L +++C S  CL ++ +  +H
Sbjct: 22  FVCTCLFNAILIYLTAFHVEKITGAYKHLIILFSLICMSFSCLEVLAHPYLH 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,580,282
Number of Sequences: 27780
Number of extensions: 264675
Number of successful extensions: 701
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)