Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40264
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                30   0.017
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.8  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 30.3 bits (65), Expect = 0.017
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 280 HYGFVAPALSNPIPDSVGAYPPAKPFTPPGVYPH 381
           H+  ++ AL      S G YP    F PP  +PH
Sbjct: 286 HHSHLSSALGRSACHSPGVYPSTAGFLPPSYHPH 319


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
 Frame = +1

Query: 295  APALSNPIPDSVGAYP---PAKPFTPPGVYPHP 384
            A A +N  P +    P   P KPFT PG  P P
Sbjct: 1109 AAAATNIRPGTADNKPQLKPQKPFTSPGGIPGP 1141


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 98  LHLSRFFHKTGSHSVFIHL-IEESVKLTKNFCCTGIIMSTHQGPSAPLDD 244
           L+ S F + T  +    +L +  +V  T +   +G++ +   GP+A +D+
Sbjct: 132 LNYSAFVNLTAYYDGGANLNLNGTVNCTSSIASSGVVSAGECGPAADVDE 181


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = +1

Query: 556 AHTFNCWVDLLDHYSLFTML 615
           +H  + WV+LL H++   ++
Sbjct: 152 SHQTDVWVELLKHFNYMKVI 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,532
Number of Sequences: 438
Number of extensions: 3523
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)