Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40264
         (647 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62370.1 68418.m07828 pentatricopeptide (PPR) repeat-containi...    31   0.87 
At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family...    29   2.0  
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex...    29   2.0  
At3g58630.1 68416.m06534 expressed protein similar to 6b-interac...    27   8.1  
At1g34210.1 68414.m04245 somatic embryogenesis receptor-like kin...    27   8.1  
At1g31750.1 68414.m03895 proline-rich family protein contains pr...    27   8.1  
At1g29380.1 68414.m03592 hypothetical protein                          27   8.1  

>At5g62370.1 68418.m07828 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 982

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +2

Query: 458 YCSSKRYGYRTNHFNMFNCNKIVTTRVTYTTAWHTHLIAGSI 583
           YC++ R     NH        IV   VTYT    +H+ AG I
Sbjct: 804 YCAAGRLDEAYNHLESMQKEGIVPNLVTYTILMKSHIEAGDI 845


>At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 473

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 289 FVAPALSNPIPDSVGAYPPAKPFTPPGVYPHP 384
           F +P  SNPIP+    + P+ P  PP   P P
Sbjct: 262 FSSPRKSNPIPNLASEFHPSPPPPPPPPPPLP 293


>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 826

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 298 PALSNPIPDSVGAYPPAKPFTPPGVYPHP 384
           P  S+ +  SV AYPP  P +PP   P P
Sbjct: 514 PPPSSEMSPSVRAYPPPPPLSPPPPSPPP 542


>At3g58630.1 68416.m06534 expressed protein similar to
           6b-interacting protein 1 (NtSIP1) [Nicotiana tabacum]
           GI:18149189
          Length = 321

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 280 HYGFVAPALSNPIPDSVGAYPPAKPFTPPGVYPH 381
           H     P   NP+P +  +  P +P T P + PH
Sbjct: 145 HQRLSLPMSINPVPVAPRSAIPRRPATSPAIIPH 178


>At1g34210.1 68414.m04245 somatic embryogenesis receptor-like kinase
           2 (SERK2) nearly identical to somatic embryogenesis
           receptor-like kinase 2 [Arabidopsis thaliana]
           GI:14573457; contains Pfam domains PF00560: Leucine Rich
           Repeat and PF00069: Protein kinase domain; identical to
           cDNA somatic embryogenesis receptor-like kinase 2
           (SERK2) GI:14573456
          Length = 628

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +1

Query: 298 PALSNPIPDSVGAYPPAKPFTPPGVYPHP 384
           P  S P P S    PP  PF PP + P P
Sbjct: 207 PVTSRPCPGSPPFSPPP-PFIPPPIVPTP 234


>At1g31750.1 68414.m03895 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 176

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 280 HYGFVAPALSNPIPDSVGAYPPAKPFTPPGVYPHP 384
           H+G   P  + P P   GAYPP   + P G YP P
Sbjct: 19  HHGHGYPPGAYPPPPQ-GAYPPPGGYPPQG-YPPP 51


>At1g29380.1 68414.m03592 hypothetical protein
          Length = 228

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 298 PALSNPIPDS-VGAYPPAKPFTPPGVYP 378
           P+L+ P P +  G YPP    TP G YP
Sbjct: 60  PSLTFPGPTTPTGGYPPLDGTTPTGGYP 87


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,687,609
Number of Sequences: 28952
Number of extensions: 245120
Number of successful extensions: 823
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)