Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40263
         (625 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   3.6  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   6.3  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   8.4  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 332 PSCLPN*HACNDVDRVEKVPVLNIPP 409
           P+  P    CN+   + +VP L +PP
Sbjct: 162 PALPPTGFLCNNYPPLPQVPPLPLPP 187


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 437 GPHESFPLARLP 472
           GPH+  PL RLP
Sbjct: 207 GPHKFQPLLRLP 218


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = +1

Query: 451 IPACTTSISFFSASLAAVILVSKLFIWMLF*VC*MGCLLVE 573
           +PAC T  + F ++L  + ++   FI  L  +  + C++ +
Sbjct: 222 VPACHTLANTFWSALYFLTIIFLFFIIPLIILLILYCIIAK 262


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,124
Number of Sequences: 336
Number of extensions: 2169
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)