Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40263
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    36   0.006
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch...    28   1.3  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    28   1.3  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   1.7  
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    25   8.9  
SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosa...    25   8.9  
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    25   8.9  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   8.9  

>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 35.5 bits (78), Expect = 0.006
 Identities = 18/80 (22%), Positives = 38/80 (47%)
 Frame = -2

Query: 258 KMEKKLRVLTGGYQSRAAXXIKQFQELQDQIEQANLELSTFKFLAEQEKAAIPRRIESLT 79
           K+E ++  L      +    IK+       ++     L+ ++FL  QE+ A+P R+E+  
Sbjct: 674 KLENRVYDLVRSSYEQRNFLIKKISHAWKALQTERKNLTCYEFLYNQERLALPNRLEAAE 733

Query: 78  EDISXQTEREKLLQKRYSEL 19
            ++S   + E   Q+ Y+ +
Sbjct: 734 IELSKMQQIEAYAQQDYARV 753


>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 401

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = -2

Query: 195 KQFQELQDQIEQANLELSTFKFLAEQEKAAIPRRIESLTEDISXQTEREKLLQKRYSELQ 16
           K+ QEL+  +  A   L     L+ +E   +  ++ESLT+DI+   ++   L +    L 
Sbjct: 109 KRIQELEKSLGDAEEALK----LSNEETVTLTAQVESLTQDITDLRQQNASLVEENQLLS 164

Query: 15  TE 10
           T+
Sbjct: 165 TQ 166


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 243 LRVLTGGYQSRAAXXIKQFQELQDQIEQANLELSTFK 133
           L ++ GGY  R +   +  +ELQ+  EQ +L  +T K
Sbjct: 263 LLLVAGGYDIRVSENRRYLKELQEFCEQKDLSYTTVK 299


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = -2

Query: 186 QELQDQIEQANLELSTFKFLAEQEKAAIPRRIESLTEDISXQTEREKLLQKRYSELQTEV 7
           +E ++ +++  L+L T +   E+ +         L E    Q  REK+ Q+R ++L  E+
Sbjct: 517 EEDEEDVDEDELDLMTDEQRMEEGRRMFQIFAARLFEQRVLQAYREKVAQQRQAKLLEEI 576

Query: 6   E 4
           E
Sbjct: 577 E 577


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 338 KKDRLESAEKRLEQNRNHMAKEAKK 264
           KKD+L+   KRL+ + +H  K  +K
Sbjct: 153 KKDKLKKKSKRLKLDDSHTQKRKRK 177


>SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 183 ELQDQIEQANLELSTFKFLAEQEKAAIPRRIESLTE 76
           EL  +++  N+ELST     EQE   + + I  + E
Sbjct: 34  ELNKKLQLPNVELSTLSHTQEQEFNELNKLIRKINE 69


>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -3

Query: 359 TRANLASKKDRLESAEKRLEQNRNHMAKEAKK 264
           T ANL  + +++ +AEK L+ ++ H AK A++
Sbjct: 230 TLANLGEQTEKIATAEKELDISKIH-AKRAEE 260


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 13/58 (22%), Positives = 30/58 (51%)
 Frame = -2

Query: 195  KQFQELQDQIEQANLELSTFKFLAEQEKAAIPRRIESLTEDISXQTEREKLLQKRYSE 22
            K+ QEL+ ++++   E  TFK    Q+  ++   +E+L +++     +   L   ++E
Sbjct: 1366 KEKQELETKLQETAKETDTFK----QQVNSLNEEVENLKKEVEQANTKNTRLAAAWNE 1419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,240,244
Number of Sequences: 5004
Number of extensions: 39350
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)