Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40263
(625 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0501 + 16593710-16593886,16595255-16595311,16595748-165974... 46 2e-05
03_06_0489 - 34284301-34284336,34285104-34285227,34285307-342853... 37 0.015
07_01_0561 + 4171812-4172144,4173468-4174253 33 0.14
03_02_0171 + 6126685-6127107,6127237-6127581,6127701-6127997,612... 33 0.24
11_06_0533 + 24734177-24735787 31 0.74
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 30 1.3
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 30 1.7
02_04_0585 - 24088344-24089366,24089833-24090075,24090305-240906... 30 1.7
02_04_0058 - 19329380-19330498,19330941-19330988,19331797-19332174 30 1.7
01_01_0472 - 3473096-3474288,3474833-3474938 29 2.3
03_01_0027 - 250837-250877,250972-252909,253733-253805,254476-25... 29 4.0
10_02_0195 + 6578384-6578629,6578710-6579300,6586302-6587512,658... 28 5.2
02_04_0344 - 22171401-22171448,22171725-22171760,22171996-221720... 28 5.2
09_04_0338 - 16801189-16801524,16801605-16801679,16801758-168018... 28 6.9
08_01_0398 - 3515439-3515573,3515965-3516516 28 6.9
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 28 6.9
06_01_0511 + 3688788-3688880,3689050-3689166,3689959-3690066,369... 27 9.2
04_04_0397 - 24921892-24922947,24923486-24923734,24923807-249241... 27 9.2
>04_03_0501 +
16593710-16593886,16595255-16595311,16595748-16597469,
16599045-16599326,16599521-16599637,16599655-16600365
Length = 1021
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/81 (24%), Positives = 42/81 (51%)
Frame = -3
Query: 497 AKEALKKEMEVVQAGMTHGDLSVDAYTQVWEECLAQVLFLPGQHRYTRANLASKKDRLES 318
A L++E++ ++ M H S++ + + + C ++F P + Y A++A D++ +
Sbjct: 653 ANSMLEEEVQYLRVAMGHESESLEDFVKAHDACQEDLMFFPNNNSYGLASVAGNSDKIAA 712
Query: 317 AEKRLEQNRNHMAKEAKKCSK 255
+ E + M EAKK S+
Sbjct: 713 LQYEFEIVKKRMDDEAKKASR 733
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/58 (37%), Positives = 35/58 (60%)
Frame = -2
Query: 186 QELQDQIEQANLELSTFKFLAEQEKAAIPRRIESLTEDISXQTEREKLLQKRYSELQT 13
Q+ Q++ + EL F+ L +QE+ A RI +LTE+++ Q E+ LQ RY +L T
Sbjct: 787 QDTFKQMDTSATELECFQELQKQEQMAASYRIRNLTEEVNKQKALERTLQSRYGDLLT 844
>03_06_0489 -
34284301-34284336,34285104-34285227,34285307-34285371,
34285472-34285555,34285661-34285789,34285887-34285976,
34286116-34286250,34286939-34286984,34287119-34287225,
34287355-34287412,34287524-34287765
Length = 371
Score = 36.7 bits (81), Expect = 0.015
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Frame = -3
Query: 470 EVVQAGMTH--GDL----SVDAYTQVW--EECLAQVLFLPGQHRYTRANLASKKDRLESA 315
E V+ GM H G+L D T+V E+ AQV L + + A +S RL A
Sbjct: 192 EAVRKGMLHSRGELLLMLDADGATKVTDLEKLEAQVRALAKKAESSLAPSSSPSQRLSDA 251
Query: 314 EKRLEQNRNHMAKEAKKCSKWKRNFV 237
E + +R H+ K+A KW RNF+
Sbjct: 252 EIAVFGSRAHLEKQALATRKWYRNFL 277
>07_01_0561 + 4171812-4172144,4173468-4174253
Length = 372
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/58 (29%), Positives = 33/58 (56%)
Frame = -3
Query: 440 DLSVDAYTQVWEECLAQVLFLPGQHRYTRANLASKKDRLESAEKRLEQNRNHMAKEAK 267
D +D + + +A+V+ L + + T+ANL + +DRL+ E+R +Q +A+ K
Sbjct: 167 DAEIDRLKRDKQLLMAEVVKLRQEQQNTKANLKAMEDRLQGTEQRQQQMMAFLARVMK 224
>03_02_0171 +
6126685-6127107,6127237-6127581,6127701-6127997,
6129763-6129990,6130716-6131036
Length = 537
Score = 32.7 bits (71), Expect = 0.24
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = -2
Query: 240 RVLTGGYQSRAAXXIKQFQELQDQIEQANLELSTFKFLAE--QEKA-AIPRRIESLTEDI 70
R + G + +Q+ E+QD +EQ LE+ + + Q +A A + SL +
Sbjct: 373 REIVGKIMEQVRTESEQWTEMQDMLEQVRLEMQELQSSRDTWQRRAIASDISLRSLNSQV 432
Query: 69 SXQTEREKLLQKRYSELQTEV 7
S Q + LQK+ SEL++++
Sbjct: 433 SEQHVED--LQKKISELESKL 451
>11_06_0533 + 24734177-24735787
Length = 536
Score = 31.1 bits (67), Expect = 0.74
Identities = 20/89 (22%), Positives = 44/89 (49%)
Frame = -2
Query: 270 KKMFKMEKKLRVLTGGYQSRAAXXIKQFQELQDQIEQANLELSTFKFLAEQEKAAIPRRI 91
+K+ + +L++LT ++ A I+ F+ + EL + ++ E AA
Sbjct: 263 EKLGEKMAELKLLTS-IKTEMAAKIESFEAELSMAMARSSELESEIDSSKSELAAAKTEA 321
Query: 90 ESLTEDISXQTEREKLLQKRYSELQTEVE 4
E L +++ E+ ++ + + +ELQ E+E
Sbjct: 322 EKLRSEVAEIDEKHRMAEAKVNELQIEIE 350
>10_08_0043 -
14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = -2
Query: 189 FQELQDQIEQANLEL-STFKFLAE--QEKAAIPRRIESLTEDISXQTEREKLLQKRYSEL 19
FQE QD+ QA L S K LA+ +E + + I+ E ++ + + L+ SEL
Sbjct: 333 FQEEQDKRMQAESALLSEGKELAQCQEEVQRLTKEIQMANEKLNELKQTKVNLENAVSEL 392
Query: 18 QTEVEN 1
+ EVEN
Sbjct: 393 KKEVEN 398
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = -3
Query: 350 NLASKKDRLESAEKRLEQNRNHMAKEAKKCSKWKRN 243
+L ++ + E ++L++ R H+ +EAKK + K+N
Sbjct: 500 DLRKQRQKFEEEWEQLDEKRTHLEEEAKKLNNEKKN 535
>02_04_0585 -
24088344-24089366,24089833-24090075,24090305-24090655,
24090736-24090823,24091178-24091275,24091813-24092025,
24092150-24092245,24093124-24093195,24093909-24094067
Length = 780
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/51 (27%), Positives = 30/51 (58%)
Frame = -3
Query: 527 MKSLLTRITAAKEALKKEMEVVQAGMTHGDLSVDAYTQVWEECLAQVLFLP 375
+K +L ++T K L K ++++AG+T D+ D + ++E+ + + F P
Sbjct: 211 VKGILNKLTPEKFDLLKG-QLIEAGITTADILKDVISLIFEKAVLEPTFCP 260
>02_04_0058 - 19329380-19330498,19330941-19330988,19331797-19332174
Length = 514
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = -3
Query: 530 HMKSLLTRITAAKEALKKE--MEVVQAGMTHGDLSVDAYTQVWEECLAQVLFLPGQHRYT 357
H K LL +I + + ++ ++ +G + D ++ + L +V L +H T
Sbjct: 162 HSKHLLKKIVRRRSSPTQQSGLQPGSSGESGLDPELNTLRREKSALLQEVTRLKQEHLQT 221
Query: 356 RANLASKKDRLESAEKRLEQNRNHMAK 276
+++ RLESAE R +Q + +AK
Sbjct: 222 IEQMSTLNQRLESAEDRQKQMVSFLAK 248
>01_01_0472 - 3473096-3474288,3474833-3474938
Length = 432
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Frame = -2
Query: 195 KQFQELQDQIEQANLE-------LSTFKFLAEQEKAAIPRRIESLTEDISXQTEREKLLQ 37
KQ +E + E+ N E LS KF E E A+ + IE+L + + + LL+
Sbjct: 354 KQLEEANSEAEKYNQELSHATEKLSEEKFRHEAEILALNQAIENLKSKLESIAKEKSLLK 413
Query: 36 KRYSELQTEVE 4
+++L+ VE
Sbjct: 414 SWFADLEQVVE 424
>03_01_0027 -
250837-250877,250972-252909,253733-253805,254476-254555,
255336-255595,255721-255785,256747-256839
Length = 849
Score = 28.7 bits (61), Expect = 4.0
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = -2
Query: 189 FQELQDQIEQANLEL-STFKFLAE-QEKAAIPRRIESLTEDISXQTEREKLLQKRYSELQ 16
FQE QD+ QA L S K LA+ QE + I+ E ++ + + L+ SEL+
Sbjct: 554 FQEEQDKRLQAESALLSEGKELAQCQEVQRLTMEIQMANEKLNELKQTKVNLENAVSELK 613
Query: 15 TEVEN 1
EVE+
Sbjct: 614 KEVES 618
>10_02_0195 +
6578384-6578629,6578710-6579300,6586302-6587512,
6587593-6587844,6587932-6588042,6588133-6588214,
6588299-6588382,6588464-6588658
Length = 923
Score = 28.3 bits (60), Expect = 5.2
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = -2
Query: 279 EGSKKMFKMEKKLRVLTG---GYQSRAAXXIKQFQELQDQIEQANLELSTFKFLAEQEKA 109
E KK+ + KK + T Y+ R A K QE+ DQ+ Q + F LA Q
Sbjct: 262 ERRKKLLDLAKKKHISTQEAQSYKKRDAYKAKMRQEITDQVTQQVTQ--QFYSLAAQHPQ 319
Query: 108 AIP 100
A P
Sbjct: 320 AFP 322
>02_04_0344 -
22171401-22171448,22171725-22171760,22171996-22172056,
22173246-22173304,22173384-22173497,22173575-22173646,
22173786-22173836,22173935-22174057,22175154-22175291
Length = 233
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -2
Query: 198 IKQFQELQDQIEQANLELSTFKFLAEQEKAAIPRRIESLTEDI 70
I++ QE+QD++E+ N E S EQ+ + I R + D+
Sbjct: 34 IEKLQEIQDELEKVNEEASDKVLEVEQKYSEIRRPVYLRRSDV 76
>09_04_0338 -
16801189-16801524,16801605-16801679,16801758-16801831,
16801972-16802059,16802185-16802336,16802423-16802582,
16802913-16803128,16803487-16803744,16804202-16804231,
16804738-16804941,16805790-16805855
Length = 552
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = -2
Query: 198 IKQFQELQDQIEQANLELSTFKFLAEQEKAAIPRRIESLTEDISXQTEREKLLQKRYSE 22
+KQF ++Q QIE+ ELS + ++ + I + T ++ + LQK S+
Sbjct: 130 LKQFSDIQSQIEKIRSELSEYSDGDDKANSLIVDENDLSTRKLNNYQAQLHALQKEKSD 188
>08_01_0398 - 3515439-3515573,3515965-3516516
Length = 228
Score = 27.9 bits (59), Expect = 6.9
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Frame = -2
Query: 195 KQFQELQDQIE----QANLELSTFKFLAEQEKAAIPRR--IESLTEDISXQTEREKLLQK 34
+ F ELQD+I+ QA ++ K EQ K + E++ + IS Q R + +K
Sbjct: 90 ESFNELQDEIQRQILQAQTDIEDLKKQLEQSKIERQHKEECEAIRKMISLQPPRSE-TEK 148
Query: 33 RYSELQTEVEN 1
++L+ E+ N
Sbjct: 149 LIADLEKEIAN 159
>04_04_1144 +
31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/73 (23%), Positives = 35/73 (47%)
Frame = -3
Query: 473 MEVVQAGMTHGDLSVDAYTQVWEECLAQVLFLPGQHRYTRANLASKKDRLESAEKRLEQN 294
++ Q + D + TQ +E +++ + + A LA+ D+L E+ ++
Sbjct: 145 LQEAQRSLADKDKELADATQSLKELGSELESSKERIQEIEAELAASADKLHKLEELKDER 204
Query: 293 RNHMAKEAKKCSK 255
H A+EAK+ S+
Sbjct: 205 SLHAAQEAKRASE 217
>06_01_0511 +
3688788-3688880,3689050-3689166,3689959-3690066,
3690634-3690825,3691010-3691201,3691484-3691602,
3691740-3691827,3692155-3692274,3692378-3692518,
3693065-3693142
Length = 415
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = -2
Query: 183 ELQDQIEQANLELSTF--KFLAEQEKAAIPRRIESLTEDI 70
E++D++++ NLEL +F K QEK + +++ L +I
Sbjct: 29 EIRDELQRTNLELESFKEKIKENQEKIKLNKQLPYLVGNI 68
>04_04_0397 -
24921892-24922947,24923486-24923734,24923807-24924157,
24924244-24924331,24924466-24924563,24925141-24925362,
24925490-24925585,24926410-24926481,24927156-24927305
Length = 793
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/51 (25%), Positives = 30/51 (58%)
Frame = -3
Query: 527 MKSLLTRITAAKEALKKEMEVVQAGMTHGDLSVDAYTQVWEECLAQVLFLP 375
+K +L ++T K L K +++++G+T D+ D + ++E+ + + F P
Sbjct: 211 VKGILNKLTPEKFDLLKG-QLMESGITTADILKDVISLIFEKAVFEPTFCP 260
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,623,810
Number of Sequences: 37544
Number of extensions: 253931
Number of successful extensions: 624
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -