Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40262
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    66   5e-12
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        30   0.29 
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    28   1.2  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    28   1.5  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   2.0  
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    27   2.0  
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    27   3.5  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    27   3.5  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   6.2  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    26   6.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   8.2  

>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 66.1 bits (154), Expect = 5e-12
 Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
 Frame = +3

Query: 258 HVGWYQSADVGNFLSLSL-LESQYHYQTSIEESVVVIYDTKKSARGFLTLKAYRLTPQAI 434
           HVGWY  A V +FLS    +E+QY YQ +   S+  +YD  +S+ G L ++AY+LTP+ +
Sbjct: 104 HVGWYLGAYVSSFLSSPFFVETQYAYQKANPNSIAFLYDLSQSSNGTLYMRAYQLTPEFM 163

Query: 435 AMYKEGDYTPEALRNLKIGYENLFMKCQLLSGTLH 539
           A ++E  +T  +L +  +   N+  +  ++    H
Sbjct: 164 AAHEEKTWTASSLNSHNLTPSNVIRELPIVIHNSH 198



 Score = 36.7 bits (81), Expect = 0.003
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
 Frame = +1

Query: 7   PENEAT-IQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFP 177
           PE E+  I+ V+ + L VM I+KHC  +S  NM    G L+G+ ++  L++++ F  P
Sbjct: 10  PELESPPIERVELESLLVMNIIKHC-RDSFPNMGTI-GQLVGIDIDGVLQVSSSFESP 65



 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 503 IHEVPIVIRNSPLTNIMISELTE 571
           I E+PIVI NS L   ++  L+E
Sbjct: 187 IRELPIVIHNSHLATCLLHSLSE 209


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 21/66 (31%), Positives = 33/66 (50%)
 Frame = -1

Query: 339 RSDSDIVTLITKGLENCLHLHSGTIQHEMINIDSSKPPHHVQLVFLLIHGVVMLWKWEAV 160
           RSD D  T+ T+G + CLH  +G  +  ++ +   K P  ++   L   G   L +  AV
Sbjct: 95  RSDVD-PTITTRGGQTCLHYAAGKGRLSIVQLLCDKAPELIRKKDL--QGQTPLHRAAAV 151

Query: 159 GNLQTV 142
           G +Q V
Sbjct: 152 GKIQVV 157


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +3

Query: 600 FWIWVLHLFSKDNFAVSWNVLMNW 671
           FW+W+L       +   W+V ++W
Sbjct: 288 FWLWILSALLSSAYTFLWDVFIDW 311


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 222  HVQLVFLLIHGVVMLWKWEAVGNLQTVLND 133
            +++ VFL IH ++  W+WE V  +  ++ D
Sbjct: 969  YLRTVFLRIHFLISEWRWEDVAQILFLIFD 998


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 136 RPNQGELPEPPPCCCMILHDSVSLFSSLPVHRTEHIGSS 20
           R N  +LP  PP    ++ +++ LF+S+  H+   +  S
Sbjct: 768 RSNSAKLPYVPPSLTSLIDNAIQLFASMFCHQPPKVMES 806


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +1

Query: 100 MEVAQGALLGLVVENRLEITNCFPFPKHDDTMDEEEYQLDMMRRLRRVNVDHFM 261
           M+  +  L GLV +    +T  +  P H +  +  +++LD  R  RR+N+  ++
Sbjct: 355 MDTTEELLSGLVKD----LTGSYKVPYHPEGPEGPKWELDFSRPWRRINMIEYL 404


>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
           exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = +1

Query: 133 VVENRLEITNCFPFPKHD----DTMDEEEYQLDMMRRLRRVNV 249
           + +NRLE  N F FP  D      +   EY   M R+L  +NV
Sbjct: 7   IAKNRLEAMNSFNFPAQDRHERAPLLGSEYDHSMARQLSLLNV 49


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +3

Query: 342 IEESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPEALRNLKIGY 494
           + + +VV YD K  +  F  L+A   TP+      E   TPE L+++ + +
Sbjct: 737 VRKDIVVQYDMKPDSPRFQQLRAQITTPEI-----EKQSTPEILKDVDVDF 782


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 160  W*SPDGSQRPNQGELPEPPP 101
            W + DGS   NQ   P PPP
Sbjct: 1868 WVNDDGSDLSNQAAPPPPPP 1887


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -3

Query: 697 NWNLIAS*FQFINTFHETAKLSFENRCSTQIQKLGSFLFRYHL 569
           NW L  S    +N +      +F N   T +  +G + F Y+L
Sbjct: 115 NWTLACSLVSIMNAY--VGVRTFSNSLETTLTSIGFYYFSYYL 155


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -1

Query: 459  CNRLPCT*Q*PEV---SNDRPSKSRILWLISL 373
            CN + C  Q   +   SN +P  +R+LWL+S+
Sbjct: 2947 CNAVSCFLQASSLLSSSNSKPLLTRVLWLLSV 2978


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,166,313
Number of Sequences: 5004
Number of extensions: 69758
Number of successful extensions: 202
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)