Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40262
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124...    78   8e-15
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130...    32   0.52 
06_02_0206 + 13005863-13005966,13006918-13007080,13008534-130086...    31   1.2  
07_01_0662 + 4972953-4973645,4973758-4974046,4974790-4974803,497...    29   2.8  
07_01_0213 - 1573315-1573485,1573583-1573765,1573858-1574046,157...    29   4.9  
02_03_0085 + 15063444-15063889,15064324-15065311                       29   4.9  
12_02_1265 - 27435096-27437675                                         28   6.4  
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047...    28   6.4  
05_01_0240 - 1791138-1791470                                           28   8.5  
03_06_0738 - 35883405-35884006,35884474-35884492                       28   8.5  
02_05_0996 - 33380363-33380597,33380767-33380851,33381206-333815...    28   8.5  

>04_03_0650 -
           18411588-18411645,18412020-18412172,18412340-18412407,
           18412499-18412600,18412695-18412766,18412843-18412891,
           18412971-18413104,18413488-18413554,18414471-18414574,
           18414677-18414793,18415538-18415647,18415763-18415772
          Length = 347

 Score = 77.8 bits (183), Expect = 8e-15
 Identities = 42/86 (48%), Positives = 56/86 (65%), Gaps = 4/86 (4%)
 Frame = +1

Query: 10  ENEATIQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKHDD 189
           E  + ++ VQ +GLAV+KI+KHC E + +   +  G LLGL V + LE+TNCFPFP  +D
Sbjct: 27  EAPSPLRVVQMEGLAVLKIIKHCEEFAPA---LVTGQLLGLDVGSVLEVTNCFPFPMRED 83

Query: 190 ----TMDEEEYQLDMMRRLRRVNVDH 255
                 D   YQL+MMR LR VNVD+
Sbjct: 84  DEEADADGANYQLEMMRCLREVNVDN 109



 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 31/82 (37%), Positives = 51/82 (62%)
 Frame = +3

Query: 261 VGWYQSADVGNFLSLSLLESQYHYQTSIEESVVVIYDTKKSARGFLTLKAYRLTPQAIAM 440
           VGWYQS  +G+F ++ L+E+  +YQ +I   V ++YD  +S +G L LKA +LT   + +
Sbjct: 112 VGWYQSCLLGSFQTVELIETFMNYQENIRRCVCIVYDPSRSNQGVLALKALKLTDSFMDL 171

Query: 441 YKEGDYTPEALRNLKIGYENLF 506
           Y+    T E LR  K+ + ++F
Sbjct: 172 YRNNGLTGEKLREKKLSWVDIF 193


>04_04_1468 +
           33811471-33811657,33811888-33811980,33812899-33813027,
           33813089-33813166,33813377-33813435,33813522-33813644,
           33814225-33814282,33814383-33814468,33814564-33814635
          Length = 294

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = +1

Query: 22  TIQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKHDDTMDE 201
           T++ V    L ++ IV H +  +    +   G LLG      +++TN +  P  +D  D 
Sbjct: 13  TLEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGSVDVTNSYAVPFEEDDKDP 72

Query: 202 EEYQLD 219
             + LD
Sbjct: 73  RIWFLD 78


>06_02_0206 +
           13005863-13005966,13006918-13007080,13008534-13008632,
           13008704-13008817,13009094-13009254,13009746-13009827,
           13009972-13010057,13011563-13011742,13011913-13012424,
           13012844-13013478
          Length = 711

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
 Frame = -1

Query: 321 VTLITKGLENC---LHLHSGT--IQHEMINIDSSKPPHHVQLVFLLI 196
           +TL+   ++NC   +H+H     I HEM+ I   KP +HV+   L++
Sbjct: 88  LTLLETLIKNCGDFVHMHVAERDILHEMVKIAKKKPDYHVKEKILIL 134


>07_01_0662 +
           4972953-4973645,4973758-4974046,4974790-4974803,
           4974848-4974856
          Length = 334

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -3

Query: 151 PDGSQRPNQGELPEPPPCCCMILHDSVSLFSSLPVHRTEHIGSSLHF 11
           P G   P QG +  PPP   +   +S   F SLP+H+ +  G ++H+
Sbjct: 207 PPGYIEPPQGYIEPPPPEPTLARIESTESF-SLPLHKVD--GRAIHY 250


>07_01_0213 -
           1573315-1573485,1573583-1573765,1573858-1574046,
           1574182-1574263,1574315-1574421,1575086-1575161,
           1575457-1575637,1575711-1575828
          Length = 368

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +3

Query: 261 VGWYQSADVGNFLSLSLLESQYH--YQTSIEESVVVIYDTKKSARGFLTLKAYR 416
           VGWY+S + G +   S  +S +H  ++     +++V  D  KSA G  T+ A+R
Sbjct: 166 VGWYRS-NPGFYGRPSNHDSVFHKAFEQLNPRAILVAVDPVKSATGNFTMNAFR 218


>02_03_0085 + 15063444-15063889,15064324-15065311
          Length = 477

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 24/75 (32%), Positives = 33/75 (44%)
 Frame = -3

Query: 232 ASSSCPTGIPPHPWCRHALEMGSSW*SPDGSQRPNQGELPEPPPCCCMILHDSVSLFSSL 53
           +SS  PT  P H W R     G     P  S     G   E    C +I+  +V+L  +L
Sbjct: 31  SSSRLPTTTPLHHWPRRRRSRGLP-PPPPPSPHSTAGPAGE---FCKIIIVPTVAL--AL 84

Query: 52  PVHRTEHIGSSLHFQ 8
           P HR  H G+++  Q
Sbjct: 85  PSHRIAHHGTAIEQQ 99


>12_02_1265 - 27435096-27437675
          Length = 859

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 579 LKRKDPSFWIWVLHLFSKDNFAVSWNVLMNW 671
           ++ KDPS+W+  LHL S+     + +  + W
Sbjct: 749 VREKDPSYWLINLHLMSEGTAVTALSRTLAW 779


>12_02_0228 +
           15903452-15903812,15904153-15904202,15904615-15904713,
           15907146-15907415,15908045-15908125,15909033-15909599,
           15909677-15910053,15910326-15911613
          Length = 1030

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +3

Query: 102 GGGSGSSPWFGR*EPSGDYQLLP 170
           GGG GS  WF R   SG   LLP
Sbjct: 47  GGGGGSGGWFSRLVASGASLLLP 69


>05_01_0240 - 1791138-1791470
          Length = 110

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
 Frame = +2

Query: 80  MKNHA-ATWRW-----LRELSLVWSLRTVWRL 157
           M+ HA   WRW     LR   L W  R VWRL
Sbjct: 24  MQQHADGQWRWRPGLCLRRFRLRWLRRAVWRL 55


>03_06_0738 - 35883405-35884006,35884474-35884492
          Length = 206

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 532 VPDNNWHFMNRFS*PIFRLRSASG 461
           + D NW  MNR+   +FRL+ A G
Sbjct: 96  IEDTNWLDMNRYHAKVFRLKRALG 119


>02_05_0996 -
           33380363-33380597,33380767-33380851,33381206-33381557,
           33381690-33382340
          Length = 440

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +2

Query: 80  MKNHAATWRWLRELSLVWSLRTVWRLPTASHFQSMTTPWMRRNTS 214
           M N + TWR +++   V     +WR+   S       PW+ R  S
Sbjct: 9   MSNVSYTWRSIQKGLTVLQNGMIWRVGNGSKINIWADPWIPRGWS 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,995,680
Number of Sequences: 37544
Number of extensions: 487576
Number of successful extensions: 1281
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)