Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40262
         (717 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.)              99   4e-21
SB_31995| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_22901| Best HMM Match : PHD (HMM E-Value=5.3e-05)                   28   6.6  
SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_21167| Best HMM Match : KH_1 (HMM E-Value=0)                        28   8.7  

>SB_33661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 425

 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 46/81 (56%), Positives = 59/81 (72%), Gaps = 4/81 (4%)
 Frame = +1

Query: 25  IQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKH----DDT 192
           I  VQ DGL V+KI+KHC EE  S  ++ QG LLGL+ +NRLEITNCFPFP +    D+ 
Sbjct: 15  IDIVQVDGLTVLKIIKHCEEEGSSG-DLVQGVLLGLIQDNRLEITNCFPFPSNKAGDDED 73

Query: 193 MDEEEYQLDMMRRLRRVNVDH 255
            D+  YQ+++MRRLR VN+DH
Sbjct: 74  DDDVNYQMEVMRRLRAVNIDH 94



 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 31/69 (44%), Positives = 42/69 (60%)
 Frame = +2

Query: 509 EVPIVIRNSPLTNIMISELTEMIPEEEGSKFLDLGTASVLEGQLRSLMERVDELESRSDQ 688
           E+P+VI+NS L N+++ EL E  P     +FL L T S LE  +R LME VDEL   S++
Sbjct: 242 EIPLVIKNSSLMNVLLCELDENTPTPSADQFLTLSTGSYLEKNVRVLMESVDELCQDSNK 301

Query: 689 VPIRYQQLV 715
               YQ+ V
Sbjct: 302 YH-NYQRSV 309



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 18/32 (56%), Positives = 27/32 (84%)
 Frame = +3

Query: 258 HVGWYQSADVGNFLSLSLLESQYHYQTSIEES 353
           HVGWYQS  +G++++ +LL+SQY YQ SIE++
Sbjct: 96  HVGWYQSTYLGSYINRTLLDSQYSYQKSIEDA 127



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 16/52 (30%), Positives = 35/52 (67%)
 Frame = +3

Query: 369 DTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPEALRNLKIGYENLFMKCQLL 524
           D  ++++G LTLKA+RL+ + + +YK+G+++ + L    I + ++F +  L+
Sbjct: 195 DPLRTSQGMLTLKAFRLSDEMMKLYKDGEFSADKLSKAGISFHSMFQEIPLV 246


>SB_31995| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 71

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 402 LKAYRLTPQAIAMYKEGDYTPEALRNLKIGYENLFMKCQLLSGTL 536
           LKAYR  PQA A+    D+  +    L +  +N F +C+    TL
Sbjct: 16  LKAYRKAPQAAAIQLMSDHGSQLRSKLLVTIDNFFFECKFQKVTL 60


>SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +1

Query: 7   PENEATIQYVQCDGLAVMKIVKHCHEES-CSNMEVAQGALLGLVVENRLEITNCFPFPKH 183
           P  +  I  V    + ++ +V H +      + +   G LLG   +  L++ NCF  P  
Sbjct: 2   PGPDEAITTVVVHPIVLLSVVDHFNRMGKVGSQKRVVGVLLGSRRKGVLDVANCFAVPFD 61

Query: 184 DDTMDEEEYQLD 219
           +D  D+  + LD
Sbjct: 62  EDDRDQNVWFLD 73


>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3066

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -1

Query: 264  QHEMINIDSSKPPHHVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKESSLSHL 103
            Q + +   S + PH V    L +    +  +W  V NL + ++   KES L HL
Sbjct: 1923 QWQGVATTSHETPHVVMEFLLSLQQYELAAEWAEVENLPSEIHQTIKESQLKHL 1976


>SB_22901| Best HMM Match : PHD (HMM E-Value=5.3e-05)
          Length = 696

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 239 ESMLIISC-WMVPECRCRQFSKPFVIRVTISLSDLY 343
           ES+   SC W+ P+C    FSK  +   T+ LS+ +
Sbjct: 134 ESLANSSCLWLCPKCDASNFSKTLLSASTLELSNSF 169


>SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -3

Query: 652 HETAKLSFENRCSTQIQKLGSFLFRYHLGELRDH 551
           H + ++S   R ST  Q L   LFR H+G LRDH
Sbjct: 800 HHSTRVS-AYRPSTNTQVLIPALFRGHMGLLRDH 832


>SB_21167| Best HMM Match : KH_1 (HMM E-Value=0)
          Length = 1650

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +2

Query: 539 LTNIMISELTEMIPEEEGSKFLDLGTASVLEGQLRSLMERVDELES 676
           +T I   E  E   +E      DLG    +EG  + +ME V ELES
Sbjct: 780 ITIIGKQEAVEAAKDELLKSIKDLGAKECVEGARQRVMEIVQELES 825


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,612,671
Number of Sequences: 59808
Number of extensions: 525040
Number of successful extensions: 1198
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)