Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40262
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic in...    66   2e-11
Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...    32   0.47 
U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with...    32   0.47 
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with...    32   0.47 
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi...    32   0.47 
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ...    31   0.82 
U23172-18|ABC48253.1|  915|Caenorhabditis elegans Hypothetical p...    28   5.8  
U23172-17|ABC48254.1|  923|Caenorhabditis elegans Hypothetical p...    28   5.8  
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    28   5.8  
Z83231-5|CAB05753.1|  239|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z48055-8|CAA88133.2|  379|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AL023847-9|CAA19553.1|  239|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.H protein.
          Length = 365

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 32/88 (36%), Positives = 55/88 (62%)
 Frame = +3

Query: 261 VGWYQSADVGNFLSLSLLESQYHYQTSIEESVVVIYDTKKSARGFLTLKAYRLTPQAIAM 440
           VG+YQS   G   S  L+ES + YQ    E+VV+IYD  K+ +G L+L+A+RL+  A+ +
Sbjct: 110 VGFYQSHQFGAGFSHDLVESMFDYQAMGPENVVLIYDPIKTRQGQLSLRAWRLSTAALDL 169

Query: 441 YKEGDYTPEALRNLKIGYENLFMKCQLL 524
             + D+ PE ++   + Y+N+F +  ++
Sbjct: 170 ASKNDWRPELVKAAGLTYQNMFEELPII 197



 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 19/97 (19%)
 Frame = +1

Query: 22  TIQYVQCDGLAVMKIVKHCHEESCSNM-----EVAQGALLGLVV--ENRLEITNCFPFPK 180
           +++++  D L VMKIVKH   E  + +     +   G L GLV   ++RLEITNCFP  +
Sbjct: 11  SVKHILLDSLVVMKIVKHVDSELHAGISEVSGDACAGVLTGLVFLEDSRLEITNCFPTVR 70

Query: 181 HDDTMDE-----EEYQ-------LDMMRRLRRVNVDH 255
           ++  MD+     ++Y+       LDM+R+ R +N+D+
Sbjct: 71  NEPVMDDDANAAQQYEEQKQHEMLDMLRKFRTMNIDY 107



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
 Frame = +2

Query: 509 EVPIVIRNSPLTNIMISELT---EMIPEEEGSKFLDLGTASVLEGQLRSLMERVDELESR 679
           E+PI+I++S L N+++SEL+       ++  ++  DLG+   LE  +R++M  VDEL ++
Sbjct: 193 ELPIIIKSSYLNNVLMSELSLAKSCSSDKYSTRHFDLGSKKSLEKSVRAMMANVDEL-NK 251

Query: 680 SDQVPIRY 703
           S Q   +Y
Sbjct: 252 SIQSLTKY 259


>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 94  SNMEVAQGALLGLVVENRLEITNCFPFP---KHDDTMDEEEYQLDMMRRLRRVN 246
           +  E   G L+G   +  +++TNCF  P    +DD   ++++   M+  L++ +
Sbjct: 32  TGQEKCMGTLMGYYEKGSIQVTNCFAIPFNESNDDLEIDDQFNQQMISALKKTS 85


>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 1, isoform a
           protein.
          Length = 2322

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = -1

Query: 300 LENCLHLHSGTIQHEMINIDSSKPPHHVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKE 121
           + + LH    T     I  DS      V+L   +IH  V+ W  E V    T+L+  TK 
Sbjct: 566 ISSWLHSLIATACEHQIGSDSFSQREWVRLRNTVIHQSVLTWNNECVNQALTILSTATKW 625

Query: 120 SSL-SHLH 100
           S L S +H
Sbjct: 626 SELTSDIH 633


>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 1, isoform b
           protein.
          Length = 2019

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = -1

Query: 300 LENCLHLHSGTIQHEMINIDSSKPPHHVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKE 121
           + + LH    T     I  DS      V+L   +IH  V+ W  E V    T+L+  TK 
Sbjct: 566 ISSWLHSLIATACEHQIGSDSFSQREWVRLRNTVIHQSVLTWNNECVNQALTILSTATKW 625

Query: 120 SSL-SHLH 100
           S L S +H
Sbjct: 626 SELTSDIH 633


>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans
           nonsense-mediated mRNA decay proteinSMG-1 protein.
          Length = 2322

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = -1

Query: 300 LENCLHLHSGTIQHEMINIDSSKPPHHVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKE 121
           + + LH    T     I  DS      V+L   +IH  V+ W  E V    T+L+  TK 
Sbjct: 566 ISSWLHSLIATACEHQIGSDSFSQREWVRLRNTVIHQSVLTWNNECVNQALTILSTATKW 625

Query: 120 SSL-SHLH 100
           S L S +H
Sbjct: 626 SELTSDIH 633


>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
           protein R52.2 protein.
          Length = 1019

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
 Frame = +3

Query: 336 TSIEESV-VVIYDTKKSARGFLTLKAYRLTPQA-IAMYKEGDYTPEALRNLKIGYENLFM 509
           T+I ES    I+ T+ S    LTL + + TP A IA   E + TP+   ++ + ++   +
Sbjct: 475 TAIAESQDFPIHSTENSTTSMLTLTSMKYTPDAPIAQLNEAEETPQLPSDVPMLFQEREL 534

Query: 510 KCQLLSGTLH 539
              ++S T++
Sbjct: 535 PVSMMSTTVN 544


>U23172-18|ABC48253.1|  915|Caenorhabditis elegans Hypothetical
           protein F25B5.1a protein.
          Length = 915

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +3

Query: 369 DTKKSARGFLTLKAYRLTPQAIAMYK--EGDYTPEALRNLKIGYENLFMKCQLLSGTL 536
           DT+K  R  +   +  L+ + +A  +  EGD T +    LKI ++N  ++C+ +S  L
Sbjct: 240 DTEKQRREDMLTTSKSLSDKLVAEEEVVEGDTTNDDFAKLKIEFKNQSIRCERVSQRL 297


>U23172-17|ABC48254.1|  923|Caenorhabditis elegans Hypothetical
           protein F25B5.1b protein.
          Length = 923

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +3

Query: 369 DTKKSARGFLTLKAYRLTPQAIAMYK--EGDYTPEALRNLKIGYENLFMKCQLLSGTL 536
           DT+K  R  +   +  L+ + +A  +  EGD T +    LKI ++N  ++C+ +S  L
Sbjct: 240 DTEKQRREDMLTTSKSLSDKLVAEEEVVEGDTTNDDFAKLKIEFKNQSIRCERVSQRL 297


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
 Frame = +1

Query: 37   QCDGLAVMKIVKHCHEESCS------NME-VAQ--GALLGLVVENRLEITNCFPF 174
            QCD  AV+K +K   EE CS      N+E +A+  G    +V ++ +++TNC  F
Sbjct: 3521 QCDIQAVVKSLKSIVEEHCSGEKRRKNLEGLAELAGITADIVEQSVIQLTNCLGF 3575


>Z83231-5|CAB05753.1|  239|Caenorhabditis elegans Hypothetical
           protein Y57A10C.1 protein.
          Length = 239

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -1

Query: 222 HVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKESSLSHLHVAA*FFMTVFHYFHHC 52
           H   V+LL    + +  W  V  +Q      T+ S+L    ++A FF+   +Y++ C
Sbjct: 110 HCPPVYLLC--CISIEVWHLVSPIQYTFPKTTRLSNLQKFKISAFFFILETYYYYTC 164


>Z48055-8|CAA88133.2|  379|Caenorhabditis elegans Hypothetical
           protein T07A5.1 protein.
          Length = 379

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/67 (22%), Positives = 29/67 (43%)
 Frame = +1

Query: 10  ENEATIQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKHDD 189
           EN+ +  Y+Q D      ++K+ +  S  N+ +     L L +  R EI  C     H +
Sbjct: 113 ENKTSNDYLQFDTQPARAVLKNFNTFSIGNLHIPSNIPLFLKMWERSEIRGCLNLIVHRN 172

Query: 190 TMDEEEY 210
               +++
Sbjct: 173 MTKSQQF 179


>AL023847-9|CAA19553.1|  239|Caenorhabditis elegans Hypothetical
           protein Y57A10C.1 protein.
          Length = 239

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -1

Query: 222 HVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKESSLSHLHVAA*FFMTVFHYFHHC 52
           H   V+LL    + +  W  V  +Q      T+ S+L    ++A FF+   +Y++ C
Sbjct: 110 HCPPVYLLC--CISIEVWHLVSPIQYTFPKTTRLSNLQKFKISAFFFILETYYYYTC 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,603,943
Number of Sequences: 27780
Number of extensions: 403281
Number of successful extensions: 1078
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)