Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40262
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.94 
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   3.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   6.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.8  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 661 NTFHETAKLSFENRCSTQ 608
           +T H T KL+F+NR  TQ
Sbjct: 172 DTVHVTFKLTFDNRAFTQ 189


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 13/48 (27%), Positives = 19/48 (39%)
 Frame = +3

Query: 336 TSIEESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPEALRN 479
           TS +   V+ Y   KS +GF     +   P+   +       P  LRN
Sbjct: 163 TSSQNIAVIEYRIPKSGKGFSLFARFLKNPRPCNVLATSLTEPYTLRN 210


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 211 GIPPHPWCRHALEMGSSW*SPDGSQRPNQGELPEPPPC 98
           G+ PH   R     GS+    D   R +  + P+PP C
Sbjct: 534 GLCPH---RRRANSGSTSSGDDELHRASLSKTPQPPQC 568


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 69  HYFHHCQSIALNILDRRFI 13
           H++HHC  I   I   RFI
Sbjct: 471 HHWHHCPEIYKAIEGIRFI 489


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 133 PNQGELPEPPPCCCMILHDSVS 68
           P    +P+P P  C ++  SVS
Sbjct: 582 PKLKGIPDPXPNTCKVIASSVS 603


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 395 ESSG*FLCIVNHN 357
           E SG +LCIVN++
Sbjct: 280 EDSGKYLCIVNNS 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,805
Number of Sequences: 438
Number of extensions: 4551
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)