Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40262
(717 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g10840.1 68414.m01246 eukaryotic translation initiation facto... 79 3e-15
At1g10840.2 68414.m01245 eukaryotic translation initiation facto... 69 3e-12
At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su... 32 0.44
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su... 32 0.44
At5g22355.1 68418.m02608 DC1 domain-containing protein contains ... 30 1.8
At1g03080.1 68414.m00282 kinase interacting family protein simil... 29 2.3
At2g46890.1 68415.m05856 expressed protein 28 5.4
At4g22260.1 68417.m03220 alternative oxidase, putative / immutan... 28 7.1
At1g11330.1 68414.m01301 S-locus lectin protein kinase family pr... 27 9.4
>At1g10840.1 68414.m01246 eukaryotic translation initiation factor 3
subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) identical to
SP|Q9C5Z2 Eukaryotic translation initiation factor 3
subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 337
Score = 79.0 bits (186), Expect = 3e-15
Identities = 43/81 (53%), Positives = 54/81 (66%), Gaps = 4/81 (4%)
Frame = +1
Query: 25 IQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKHDD----T 192
++ VQ +GLAV+KI+KHC E S + + G LLGL V + LE+TNCFPFP DD
Sbjct: 22 LRVVQIEGLAVLKIIKHCKEFSPT---LVTGQLLGLDVGSVLEVTNCFPFPVRDDDEEIE 78
Query: 193 MDEEEYQLDMMRRLRRVNVDH 255
D YQL+MMR LR VNVD+
Sbjct: 79 ADGANYQLEMMRCLREVNVDN 99
Score = 68.9 bits (161), Expect = 3e-12
Identities = 30/82 (36%), Positives = 52/82 (63%)
Frame = +3
Query: 261 VGWYQSADVGNFLSLSLLESQYHYQTSIEESVVVIYDTKKSARGFLTLKAYRLTPQAIAM 440
VGWYQS +G++ ++ L+E+ +YQ +I+ V +IYD K+ G L LKA +L+ + +
Sbjct: 102 VGWYQSTVLGSYQTVELIETFMNYQENIKRCVCIIYDPSKADLGVLALKALKLSDSFMEL 161
Query: 441 YKEGDYTPEALRNLKIGYENLF 506
Y+ G++T E LR + ++F
Sbjct: 162 YRGGNFTGEKLREKNFSWMDIF 183
>At1g10840.2 68414.m01245 eukaryotic translation initiation factor 3
subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) identical to
SP|Q9C5Z2 Eukaryotic translation initiation factor 3
subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 250
Score = 68.9 bits (161), Expect = 3e-12
Identities = 30/82 (36%), Positives = 52/82 (63%)
Frame = +3
Query: 261 VGWYQSADVGNFLSLSLLESQYHYQTSIEESVVVIYDTKKSARGFLTLKAYRLTPQAIAM 440
VGWYQS +G++ ++ L+E+ +YQ +I+ V +IYD K+ G L LKA +L+ + +
Sbjct: 15 VGWYQSTVLGSYQTVELIETFMNYQENIKRCVCIIYDPSKADLGVLALKALKLSDSFMEL 74
Query: 441 YKEGDYTPEALRNLKIGYENLF 506
Y+ G++T E LR + ++F
Sbjct: 75 YRGGNFTGEKLREKNFSWMDIF 96
>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26s proteasome regulatory subunit s12
(proteasome subunit p40) (mov34 protein) SP:P26516 from
[Mus musculus]; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 308
Score = 31.9 bits (69), Expect = 0.44
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +1
Query: 22 TIQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKHDDTMDE 201
TI+ V L ++ IV H + + + + G LLG +++TN + P +D D
Sbjct: 13 TIEKVVVHPLVLLSIVDHYNRVAKDSSKRVVGVLLGSSSRGVVDVTNSYAVPFEEDDKDP 72
Query: 202 EEYQLD 219
+ LD
Sbjct: 73 SIWFLD 78
>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26S proteasome regulatory subunit S12
(MOV34) SP:P26516 from [Mus musculus]
Length = 310
Score = 31.9 bits (69), Expect = 0.44
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +1
Query: 22 TIQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKHDDTMDE 201
TI+ V L ++ IV H + + + G LLG +++TN + P +D D
Sbjct: 13 TIEKVIVHPLVLLSIVDHYNRVAKDTSKRVVGVLLGSSSRGTVDVTNSYAVPFEEDDKDT 72
Query: 202 EEYQLD 219
+ LD
Sbjct: 73 SIWFLD 78
>At5g22355.1 68418.m02608 DC1 domain-containing protein contains
Pfam PF03107: DC1 domain; similar to ULI3 [Arabidopsis
thaliana] GI:17225050
Length = 664
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +2
Query: 254 ISCWMVPECRCRQFSKPFVIRV-TISLSDLY*GECCCDLRYKEISQRILDFEGLSFDTSG 430
+S W V + RC S+P + L + + CCD YKEI +L + FD
Sbjct: 476 VSDWWVLDVRCGSRSEPVIHDGHRHPLYYEHKKDHCCDACYKEIDGYLLSCDTCDFDLDL 535
Query: 431 YC 436
+C
Sbjct: 536 HC 537
>At1g03080.1 68414.m00282 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1744
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +2
Query: 554 ISELTEMIPEEEGSKFLDLGTASVLEGQLRSLMERVDELESRSDQVPIRYQQ 709
IS L E + + E L A EG++ SL ++V +L ++ ++YQQ
Sbjct: 355 ISNLEERLHKAEEDSRLTNQRAENAEGEVESLKQKVSKLIEENEAYELQYQQ 406
>At2g46890.1 68415.m05856 expressed protein
Length = 322
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Frame = +3
Query: 603 WIWVLHL----FSKDNFAVSWNVLMNWNQEAIKFQLGTNSWW 716
WIW + L F ++N+ W +W ++ Q G + WW
Sbjct: 113 WIWSIRLTHNYFRRENW--EWGAREDWRFNDLRKQYGKHWWW 152
>At4g22260.1 68417.m03220 alternative oxidase, putative / immutans
protein (IM) identical to IMMUTANS from Arabidopsis
thaliana [gi:4138855]; contains Pfam profile PF01786
alternative oxidase
Length = 351
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 597 SFWIWVLHLFSKDNFAVSWNVLMNWNQEAIKFQLGTNSWW 716
+F W + K +FA SWN + + I +LG NSWW
Sbjct: 155 TFGWWRRADYLKVHFAESWNEM---HHLLIMEELGGNSWW 191
>At1g11330.1 68414.m01301 S-locus lectin protein kinase family
protein contains Pfam domains, PF00954: S-locus
glycoprotein family, PF00069: Protein kinase domain, and
PF01453: Lectin (probable mannose binding)
Length = 840
Score = 27.5 bits (58), Expect = 9.4
Identities = 8/17 (47%), Positives = 15/17 (88%)
Frame = -1
Query: 426 EVSNDRPSKSRILWLIS 376
EV+NDRP+ S ++W+++
Sbjct: 778 EVANDRPNVSNVIWMLT 794
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,771,812
Number of Sequences: 28952
Number of extensions: 382028
Number of successful extensions: 962
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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