Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40261
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   2.9  
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    26   3.8  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   5.0  
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    25   5.0  
SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe...    25   8.8  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    25   8.8  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
 Frame = +1

Query: 58  CRTHLNIDISNAHCGPWRHIQDHSCLRAGC---IKNINHIAWLVP 183
           C   +N   S   CG   H+   SC+R  C   I+  N  AW  P
Sbjct: 200 CTDTINPSTSIWSCGTCYHVFHLSCIRKWCKNSIEQRNEDAWRCP 244


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 470 RLIQRQQQNNE-TKTTKIHIHENSTRTLNITRAPERFDVI 354
           R++  Q  +N+ +K+T +   E     L I+R P  +D+I
Sbjct: 287 RVVGIQMDSNDGSKSTPLFSEEEEEEFLEISRTPNLYDII 326


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 267 PKTTITNRVSLARLSDGSKNVLLLFQNFHNHVEP 368
           PKT +T  +S +  S  S   +L  QNF+N   P
Sbjct: 577 PKTNLTRSLSYSEQSFDSGVSILSCQNFYNIFHP 610


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 60  QDTFEHRHFERTLRSVETHPGPLLSEG 140
           QD  E + +  +++S  TH  PL++ G
Sbjct: 147 QDELERKEYNESMQSSVTHKRPLVTRG 173


>SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 455 QQQNNETKTTKIHIHENSTRTLNI 384
           Q+ NNET+  K   H NS +T  I
Sbjct: 12  QEHNNETQNHKQEDHSNSYQTRTI 35


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 449 QNNETKTTKIHIHENSTRTLNITRAPERFDVIMKI 345
           +N  T    + +  N  + LNIT   +RF+V+ KI
Sbjct: 273 ENEITGEILLGLDSNVLKELNITSFGKRFEVLRKI 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,819,655
Number of Sequences: 5004
Number of extensions: 31939
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)