Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40261
(513 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0510 + 24420402-24422582 31 0.54
07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,557... 30 0.95
01_06_0542 + 30096277-30096340,30096444-30096529,30096810-300969... 28 3.8
11_06_0667 + 26071774-26072070,26072352-26073153,26073209-260734... 27 8.8
07_01_0589 - 4381188-4381433,4381509-4381604,4381673-4381858,438... 27 8.8
04_04_0036 - 22307328-22308026 27 8.8
03_05_1160 + 30826972-30828375,30828641-30828754,30828901-308290... 27 8.8
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917... 27 8.8
>11_06_0510 + 24420402-24422582
Length = 726
Score = 31.1 bits (67), Expect = 0.54
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -3
Query: 163 D*CFLCSRPSDRSGPGCVSTDRNVRSKC-RCSNVSCSSHYDAQ 38
D CF + P+D+ GC S + SKC RC S S + DA+
Sbjct: 504 DLCFYANHPADKDDDGCCSCSSS--SKCLRCLCSSSSGYPDAE 544
>07_01_0733 +
5570084-5570282,5570395-5570600,5572484-5572624,
5572773-5572949,5573049-5573145,5573575-5573687,
5573774-5573896,5574004-5574075,5575340-5575432,
5575564-5575674,5575767-5575889,5576834-5576890,
5576939-5577022,5577140-5577214,5577418-5577554,
5577719-5577853,5579029-5579168,5579334-5579399,
5579732-5579838,5579910-5579990,5580064-5580138,
5580224-5580325,5581837-5582005,5582090-5582217,
5582596-5582679,5582779-5582879,5583729-5583882,
5583964-5584038,5584112-5584262,5584463-5585078,
5585427-5585487,5585874-5586019,5586104-5586287,
5586363-5586440,5586603-5586931,5587023-5587199,
5587571-5587667,5587742-5587897,5587962-5588198,
5588271-5588354,5588426-5588486,5588762-5588898
Length = 1912
Score = 30.3 bits (65), Expect = 0.95
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +1
Query: 34 LTARHS-VNCRTHLNIDISNAHCGPWRHIQDHSCLRAGC-IKNINHIAWLVPRS*SVALT 207
L+A+ S +NC + + +IS H G H + + AGC ++ + H+ P+ A+
Sbjct: 725 LSAKQSLINCASDIPSEISQMHAGSVFHGYVCNIIEAGCFVRFLGHLTGFSPK--DKAVD 782
Query: 208 RSALRVRTRRYV 243
RS ++ YV
Sbjct: 783 RSVEKLSNAFYV 794
>01_06_0542 +
30096277-30096340,30096444-30096529,30096810-30096934,
30097405-30097513,30097865-30097981,30098066-30098149,
30098795-30098914,30099416-30099502,30100160-30100237
Length = 289
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 112 HIQDHSCLRAGCIKNINHIAWLVPRS*SVALTRSALR 222
HI S L G + N+N IA VPR VA R+ LR
Sbjct: 183 HIGSFSFLGGGSVFNLNQIAQDVPRYMMVAGDRAELR 219
>11_06_0667 +
26071774-26072070,26072352-26073153,26073209-26073411,
26075078-26075521,26075703-26075758,26076323-26076402,
26077098-26077174,26077279-26078301
Length = 993
Score = 27.1 bits (57), Expect = 8.8
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -1
Query: 435 QDDKNSYTRELYAHAKHNARAREVRRDYENFEITIKHF*IRRRDELAKRDS*S*SSVR 262
QD ++ +H+ ARA EV ++E E+ + R E +D+ SSVR
Sbjct: 582 QDAQDVPASSSTSHSNPEARAEEVNDEFEKGEVVTQSINEVERHEAGHQDAVQTSSVR 639
>07_01_0589 -
4381188-4381433,4381509-4381604,4381673-4381858,
4382704-4382825,4384127-4384189,4384777-4384930,
4387354-4387381,4387784-4387837,4387950-4388294,
4388382-4388638
Length = 516
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 429 DKNSYTRELYAHAKHN 382
DKNSY +LY H HN
Sbjct: 238 DKNSYMLDLYKHQTHN 253
>04_04_0036 - 22307328-22308026
Length = 232
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = -3
Query: 142 RPSDRSGPGCVSTDRNVR--SKCRCSNVSCSSHYD 44
RP R G + +R V+ CRC+ C HYD
Sbjct: 113 RPLPRHGTTETAAERQVQRGGPCRCACNYCGGHYD 147
>03_05_1160 +
30826972-30828375,30828641-30828754,30828901-30829032,
30830087-30830224
Length = 595
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 151 LCSRPSDRSGPGCVSTDRNVRSKCRCSNVS--CSSHYDAQLTA 29
+C P + S G ++ D + S+C CS S S+H DA A
Sbjct: 347 MCPEPDNGSLDGRLTEDPPLSSRCDCSKQSEKKSAHLDANCCA 389
>03_05_0697 +
26888791-26888861,26890468-26890579,26891561-26891757,
26892215-26892266,26893530-26893795,26894007-26894229,
26895154-26895327,26895408-26895485,26895566-26895817,
26896138-26898204,26899477-26901322,26901474-26901574,
26902179-26902535,26902681-26902799,26903558-26903559,
26903630-26903662,26903709-26903841,26904285-26904537,
26905688-26905912,26906401-26906466,26907373-26907471,
26908528-26908545,26908546-26908893,26909878-26910354
Length = 2522
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +1
Query: 364 NLSGARVMFSVRVEFSCI 417
+L+GAR+M S R++ SCI
Sbjct: 858 SLNGARIMKSTRIQISCI 875
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,611,680
Number of Sequences: 37544
Number of extensions: 204441
Number of successful extensions: 495
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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