Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40259
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 27 1.8
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch... 27 1.8
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce... 26 4.2
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 26 4.2
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch... 26 4.2
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 26 4.2
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 26 5.5
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha... 26 5.5
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 25 7.3
SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha... 25 7.3
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 227 YLNIKKWQMTSWRSHGCTRERITR 298
++++ K+Q WR GC ER+ R
Sbjct: 54 FVDVGKFQSWKWRHWGCVTERVLR 77
>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 667
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +1
Query: 316 PLHE*T*TLSCSTIVTLWH*CTDVIPEKSELRILQKYFPLNSWIPKYSLK 465
PLHE S + + W + S +R + Y P+ W+P YSL+
Sbjct: 26 PLHEIPSYQSLARRSSTWKRANIPQQKPSLVRRINYYIPVLHWLPNYSLR 75
>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 191 LNYPRTLNSHYFYLNIKKWQMTSWRS 268
+N+ L SHY Y I WQ W S
Sbjct: 39 INFGLHLLSHYQYWRILLWQFIYWNS 64
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 25 ITPKGENNSVFQLTEQFLTEDYANNGIE 108
+TP +++ L+E FLT++ NG+E
Sbjct: 949 MTPSNGLRNIYPLSETFLTKEAIANGLE 976
>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 388
Score = 26.2 bits (55), Expect = 4.2
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 351 NYCYSVALMHRRDTRKVRVKNFAEVFPSKFL-DSQVFTQARETAAVIPPDVPRILLSFHE 527
+YCY ++ +D RK+ +N FP+ D+Q T AR + D R + S E
Sbjct: 85 DYCYYKKILKNKDFRKLLNENLHVDFPADLTEDAQRNTVARILNSKQLSDAIRNINSILE 144
Query: 528 TTLR 539
LR
Sbjct: 145 KYLR 148
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 34 KGENNSVFQLTEQFLTEDYANNGIELNNRFGDDASEKIPLKNLSK 168
KG++ S T TE Y N E+ ++ G+ E PL+ SK
Sbjct: 1131 KGKSLSFVSSTSTVDTEYYVNLSNEITSKGGNGIPESDPLQGSSK 1175
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +2
Query: 473 NRSCYSTRRSTHPIIIPRDYTATDLEEE 556
+R+ ++R S+ P+I+P D++A E+E
Sbjct: 114 SRALRASRGSSGPLIVPIDHSAFQAEDE 141
>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 541
Score = 25.8 bits (54), Expect = 5.5
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +1
Query: 100 GIELNNRFGDDASEKIPLKNLSKLPEFKIATQLPKDAEFSLFLPKHQEMANDF 258
G+ +++F S IP K L PEFKIAT + F + K+ +A F
Sbjct: 136 GMRPHDKFYFVHSYMIPEKGLILPPEFKIATTKYGNETFVGAIVKNNFLATQF 188
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 175 EFKIATQLPKDAEFSLFLPKHQE 243
E A+ D EFSLF+P+H++
Sbjct: 296 ELSDASSSDLDEEFSLFIPRHKK 318
>SPBC30B4.08 |eri1||double-strand siRNA
ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 25.4 bits (53), Expect = 7.3
Identities = 24/100 (24%), Positives = 47/100 (47%)
Frame = +3
Query: 264 VLMDVPENELQDLLSTCAFARVNLNPQLFNYCYSVALMHRRDTRKVRVKNFAEVFPSKFL 443
+L D+ E + D + + R ++NP L +YC S+ + + K + F++V
Sbjct: 109 LLFDLIEKSIIDEFHS--YVRPSMNPTLSDYCKSLTGIQQCTVDKAPI--FSDVL----- 159
Query: 444 DSQVFTQARETAAVIPPDVPRILLSFHETTLRRT*KKNTA 563
++F R+ + ++ P V I + ++ RT KN A
Sbjct: 160 -EELFIFLRKHSNILVPSVDEIEIIEPLKSVPRTQPKNWA 198
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,850,410
Number of Sequences: 5004
Number of extensions: 61202
Number of successful extensions: 179
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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