Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40259
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1023 + 8840754-8842988,8843189-8843362                           34   0.11 
01_06_1276 - 35918954-35919106,35919220-35919325,35919477-359195...    33   0.26 
02_05_0973 + 33209385-33209456,33210517-33210721,33210810-332109...    32   0.35 
01_07_0205 - 41978437-41980599,41980805-41981215                       29   3.3  
01_01_0347 + 2765517-2767109,2767214-2767228                           28   5.7  
03_03_0246 + 15789635-15794227,15794314-15794555,15794630-157947...    28   7.5  
02_05_0449 - 29107310-29107377,29107732-29107777,29107860-291079...    28   7.5  

>07_01_1023 + 8840754-8842988,8843189-8843362
          Length = 802

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +1

Query: 10  PNEPLITPKGENNSVFQLTEQFLTEDYANNGIELNNRFGDDASEKIPLKNLS 165
           P++ ++  K +NN    L    +  + ANN   L+ RF +DA+  IP +NLS
Sbjct: 481 PSKVVLPKKSKNNQRRNLVTTAVKCEEANND-PLSRRFSEDANRNIPTRNLS 531


>01_06_1276 -
           35918954-35919106,35919220-35919325,35919477-35919574,
           35919693-35919757,35919877-35920033,35920177-35920268,
           35920379-35920493,35920574-35920622,35920705-35920858,
           35920993-35921019,35921530-35921707,35922326-35922685,
           35922979-35922987,35923170-35923238
          Length = 543

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +1

Query: 166 KLPEFKIATQLPKDAEFSLFLPKHQEM-ANDFLAFSWMYQRTNYKICYRH 312
           ++P++K+  + PKD  F   LPK   +   DF + ++ +Q  NY +  RH
Sbjct: 346 RVPDYKVTIRPPKDGSFFKNLPKSSAIKLIDFGSTTFEHQDHNYVVSTRH 395


>02_05_0973 +
           33209385-33209456,33210517-33210721,33210810-33210975,
           33211268-33211490,33211928-33212004,33212090-33212183,
           33212202-33212271,33212350-33212447,33212565-33212692,
           33212772-33212900,33213013-33213421,33213984-33214105,
           33214224-33214313,33215092-33215304,33215453-33215584,
           33216258-33216333,33216403-33216420
          Length = 773

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 442 WIPKYSLKLVKPQLLFHQTFHASYYHSTRLHCDGLRRR 555
           W  + S   +KP ++ HQ      Y +TRLH + LRRR
Sbjct: 288 WSQETSKMNIKPDIILHQK--GENYEATRLHFENLRRR 323


>01_07_0205 - 41978437-41980599,41980805-41981215
          Length = 857

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 84  LSQKLFCELKHRIV-FALGCDERLIWTIE 1
           L  +L+CEL   +V +A  C+ER +W IE
Sbjct: 311 LRSRLYCELDDWLVSWADACEERSVWRIE 339


>01_01_0347 + 2765517-2767109,2767214-2767228
          Length = 535

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +1

Query: 439 SW--IPKYSLKLVKPQLLFHQTFHASYYHSTRLHCDGLRRRTPP 564
           SW  +P    +L +P  L  +  H S+ H   L+  GL   TPP
Sbjct: 303 SWRNLPSTDFELDRPLPLSSKITHGSHSHKKALNGSGLNLSTPP 346


>03_03_0246 + 15789635-15794227,15794314-15794555,15794630-15794771,
            15796089-15796272,15796349-15796696,15796753-15797450,
            15798208-15798900
          Length = 2299

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +1

Query: 19   PLITPKGENNSVFQLTEQFLTEDYANNGIELNNRFGDDASEKIPLKNLSKLPEFKIATQL 198
            PL  P  ++        QF+     +N    NNRF + ++  +P  N   +P    ATQ 
Sbjct: 2092 PLSVPLQQHPMDGTAAAQFVHNIQVDNKASSNNRFQEPSASVVPADNSKNIPNAS-ATQF 2150

Query: 199  PKD 207
              D
Sbjct: 2151 TDD 2153


>02_05_0449 -
           29107310-29107377,29107732-29107777,29107860-29107934,
           29108053-29108122,29108313-29108408,29108728-29108914,
           29109001-29109169,29109614-29109646,29109731-29109841,
           29110070-29111256,29112380-29112448,29114417-29114975,
           29115455-29115589,29115714-29115896
          Length = 995

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/58 (25%), Positives = 31/58 (53%)
 Frame = +2

Query: 416 CRSISL*ILGFPSIHSSS*NRSCYSTRRSTHPIIIPRDYTATDLEEEHRLAYWREDIG 589
           CR++   I G  S++ S   +SC     ++ P+++P   +++D   E  L Y+ ++ G
Sbjct: 734 CRAVVTEIFGDSSLNVSHYLKSCSGQGSTSMPVLVP--LSSSDHHMELNLRYYSKNAG 789


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,152,595
Number of Sequences: 37544
Number of extensions: 382500
Number of successful extensions: 991
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)