Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40259
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_44080| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_980| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.5  
SB_17059| Best HMM Match : 7tm_1 (HMM E-Value=2.9e-34)                 29   2.5  
SB_57310| Best HMM Match : rve (HMM E-Value=2.5e-25)                   29   4.4  
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)                   29   4.4  
SB_51486| Best HMM Match : F5_F8_type_C (HMM E-Value=3.3e-22)          28   5.8  
SB_39853| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   5.8  
SB_19278| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   5.8  
SB_20001| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_18969| Best HMM Match : F5_F8_type_C (HMM E-Value=8.4e-38)          28   5.8  
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)                    28   5.8  
SB_5362| Best HMM Match : F5_F8_type_C (HMM E-Value=8.4e-38)           28   5.8  
SB_25390| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_4412| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1324

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/67 (22%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
 Frame = +2

Query: 149 PSRTSANFQNLKLQLNYPRTLN----SHYFYLNIKKWQMTSWRSHGCTRERITRFAIDMR 316
           P R SA   + ++ + +P+ L+    SH  ++N  + ++ +WR +G   +  T+ +    
Sbjct: 469 PMRESALIGSKEIDVIFPKELDHIRESHTLFMNELEDRIQNWRQYGIVGDIFTKLSSSYH 528

Query: 317 LCTSKPE 337
           + T+K +
Sbjct: 529 VSTNKQQ 535


>SB_44080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +3

Query: 306 STCAFARVNLNPQLFNYCYSVALMHRRDTRKVRVKNFAEVFPS-KFLDSQVFTQARETAA 482
           S C   + + NP+L NY Y+  L     T  + +   + + PS   + + + TQ  + A 
Sbjct: 36  SKCVVLKSSENPKLLNYFYAADLPEEFATANISITPPSSLSPSTNIIITTIVTQQHDFAT 95

Query: 483 VI 488
           +I
Sbjct: 96  II 97


>SB_980| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 400 SELRILQKYFPLNSWIPKYSLK 465
           S L  L+K FP+  W+PKY+ +
Sbjct: 64  SPLETLEKLFPIVQWLPKYNFR 85


>SB_17059| Best HMM Match : 7tm_1 (HMM E-Value=2.9e-34)
          Length = 333

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = +3

Query: 276 VPENELQDLLSTCAFARVNLNPQLFNYCYSVALMHRRDTRKVRVKNFAEVFPSKFLDSQV 455
           +P   +  L   CAF  V +   + ++CY + + H   + + R+ + +     + L SQ 
Sbjct: 157 IPPTSMTSLWIACAFITVVIPLTIISFCY-LRMCHLASSHRRRITSESSATCREILHSQR 215

Query: 456 FTQARETAAVI 488
             +A  TA +I
Sbjct: 216 NNKAMWTAGLI 226



 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 487 FHQTFHASYYHSTRLHCDGLRRRTPPCVLARRYRHQPA 600
           F   F   +  STRLH DG+R  T     + R  H+ A
Sbjct: 285 FRSAFKTIFGMSTRLHNDGIRNSTERQTQSPREEHKTA 322


>SB_57310| Best HMM Match : rve (HMM E-Value=2.5e-25)
          Length = 440

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 255 LLGVLMDVPENELQDLLSTCAFARVNLNPQLFNYCYSVALMHRRDTRKV 401
           LL +L  +PEN+          + V  NP+L  Y  +V L  ++  RK+
Sbjct: 384 LLAMLRTLPENQKSKCADMGRSSEVESNPKLPKYKATVRLQEQQSRRKI 432


>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
          Length = 2748

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 49  SVFQLTEQFLTEDYANNGIELNNRFGDDASEKIPLKNL-SKLPEFKIATQLPKDAEFSLF 225
           S +Q+T QF++ +Y N    L   FGDD  +   +++L +   E  +   +    E+  F
Sbjct: 126 SAYQITVQFISSNYGNFNQRLVFDFGDDDGKAKIVRHLGASRAEHPLPPNMKSTIEYGAF 185


>SB_51486| Best HMM Match : F5_F8_type_C (HMM E-Value=3.3e-22)
          Length = 181

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
 Frame = +1

Query: 433 LNSWIPKYSLKLVKPQLLFHQTFHASYYHSTRLHCDGLRRRTPPCVLARRYRHQP----A 600
           L+ W+ +Y L+  + ++ FH       +         L     P ++AR  R +P    A
Sbjct: 31  LDQWVTQYKLEYSQNRVHFHSYLSGKVFQGNHDRNSKLSHILKPAIIARYIRVRPQAWHA 90

Query: 601 SLSLAFGLPVYGQR 642
            +S+  GL  YG R
Sbjct: 91  HISMRVGL--YGCR 102


>SB_39853| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 254

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
 Frame = +1

Query: 433 LNSWIPKYSLKLVKPQLLFHQTFHASYYHSTRLHCDGLRRRTPPCVLARRYRHQP----A 600
           L+ W+ +Y L+  + ++ FH       +         L     P ++AR  R +P    A
Sbjct: 80  LDQWVTQYKLEYSQNRVHFHSYLSGKVFQGNHDRNSKLSHILKPAIIARYIRVRPQAWHA 139

Query: 601 SLSLAFGLPVYGQR 642
            +S+  GL  YG R
Sbjct: 140 HISMRVGL--YGCR 151


>SB_19278| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 303

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
 Frame = +1

Query: 433 LNSWIPKYSLKLVKPQLLFHQTFHASYYHSTRLHCDGLRRRTPPCVLARRYRHQP----A 600
           L+ W+ +Y L+  + ++ FH       +         L     P ++AR  R +P    A
Sbjct: 74  LDQWVTQYKLEYSQNRVHFHSYLSGKVFQGNHDRNSKLSHILKPAIIARYIRVRPQAWHA 133

Query: 601 SLSLAFGLPVYGQR 642
            +S+  GL  YG R
Sbjct: 134 HISMRVGL--YGCR 145


>SB_20001| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 722

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
 Frame = +1

Query: 433 LNSWIPKYSLKLVKPQLLFHQTFHASYYHSTRLHCDGLRRRTPPCVLARRYRHQP----A 600
           L+ W+ +Y L+  + ++ FH       +         L     P ++AR  R +P    A
Sbjct: 279 LDQWVTQYKLEYSQNRVHFHSYLSGKVFQGNHDRNSKLSHILKPAIIARYIRVRPQAWHA 338

Query: 601 SLSLAFGLPVYGQR 642
            +S+  GL  YG R
Sbjct: 339 HISMRVGL--YGCR 350


>SB_18969| Best HMM Match : F5_F8_type_C (HMM E-Value=8.4e-38)
          Length = 488

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
 Frame = +1

Query: 433 LNSWIPKYSLKLVKPQLLFHQTFHASYYHSTRLHCDGLRRRTPPCVLARRYRHQP----A 600
           L+ W+ +Y L+  + ++ FH       +         L     P ++AR  R +P    A
Sbjct: 407 LDQWVTQYKLEYSQNRVHFHSYLSGKVFQGNHDRNSKLSHILKPAIIARYIRVRPQAWHA 466

Query: 601 SLSLAFGLPVYGQR 642
            +S+  GL  YG R
Sbjct: 467 HISMRVGL--YGCR 478


>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
          Length = 2128

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +1

Query: 4   DRPNEPLITPKGENNSVFQLTEQFLTEDYANNGIELNNRFGDDASEKIPLKNLSKLPEFK 183
           D+P+  +  P+G    +     QF T DY    +  + +  D ++  IPL   ++  E K
Sbjct: 298 DKPSTVVPLPQGAEVKLQDKRRQFETLDYKAQRLHSSGKSFDSSANSIPLSTSTRRAESK 357


>SB_5362| Best HMM Match : F5_F8_type_C (HMM E-Value=8.4e-38)
          Length = 199

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
 Frame = +1

Query: 433 LNSWIPKYSLKLVKPQLLFHQTFHASYYHSTRLHCDGLRRRTPPCVLARRYRHQP----A 600
           L+ W+ +Y L+  + ++ FH       +         L     P ++AR  R +P    A
Sbjct: 126 LDQWVTQYKLEYSQNRVHFHSYLSGKVFQGNHDRNSKLSHILKPAIIARYIRVRPQAWHA 185

Query: 601 SLSLAFGLPVYGQR 642
            +S+  GL  YG R
Sbjct: 186 HISMRVGL--YGCR 197


>SB_25390| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +3

Query: 405 VKNFAEVFPSKFLDSQVFTQ--ARETAAVIPPDVPRILLSFHETTLR 539
           +KN +++  S+  D Q+FT    R TA     D+P++ +   E+ ++
Sbjct: 72  IKNMSKLLSSQCFDDQIFTPKLVRHTAESPDEDIPQMFVGSLESDIK 118


>SB_4412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1095

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +1

Query: 376 CTDVIPEKSELRILQKY----FPLNSWIPKYSLKLVKPQLL 486
           C +    K +L  ++KY    FP+  W+ KY+L  ++  L+
Sbjct: 363 CAESCQRKIDLEAIKKYTKKRFPIAKWLSKYNLHFLQCDLI 403


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,355,011
Number of Sequences: 59808
Number of extensions: 453426
Number of successful extensions: 1083
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)