Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40259
(658 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC021975-1|AAH21975.2| 255|Homo sapiens TSEN2 protein protein. 35 0.29
BC019582-1|AAH19582.1| 465|Homo sapiens tRNA splicing endonucle... 35 0.29
BC004211-1|AAH04211.1| 465|Homo sapiens TSEN2 protein protein. 35 0.29
BC004178-1|AAH04178.1| 465|Homo sapiens TSEN2 protein protein. 35 0.29
AK074794-1|BAC11213.1| 439|Homo sapiens protein ( Homo sapiens ... 35 0.29
AY055757-1|AAL25832.1| 316|Homo sapiens decay-accelerating fact... 33 1.2
AB240569-1|BAE97425.1| 525|Homo sapiens decay-accelerating fact... 33 1.2
L02785-1|AAA58443.1| 764|Homo sapiens DRA protein. 31 2.7
BC025671-1|AAH25671.1| 764|Homo sapiens solute carrier family 2... 31 2.7
>BC021975-1|AAH21975.2| 255|Homo sapiens TSEN2 protein protein.
Length = 255
Score = 34.7 bits (76), Expect = 0.29
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Frame = +1
Query: 352 TIVTLWH*CTDVIPEKSELRILQKYFPLNSWIPKYSLKLVKPQLLFHQ---TFHASYYHS 522
TIV LW T V P + YF W+PK LK LL+ + +HASY
Sbjct: 114 TIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGLKYGTDLLLYRKGPPFYHASYSVI 173
Query: 523 TRL---HCDGLRRR 555
L H +G RR
Sbjct: 174 IELVDDHFEGSLRR 187
>BC019582-1|AAH19582.1| 465|Homo sapiens tRNA splicing endonuclease
2 homolog (S. cerevisiae) protein.
Length = 465
Score = 34.7 bits (76), Expect = 0.29
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Frame = +1
Query: 352 TIVTLWH*CTDVIPEKSELRILQKYFPLNSWIPKYSLKLVKPQLLFHQ---TFHASYYHS 522
TIV LW T V P + YF W+PK LK LL+ + +HASY
Sbjct: 324 TIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGLKYGTDLLLYRKGPPFYHASYSVI 383
Query: 523 TRL---HCDGLRRR 555
L H +G RR
Sbjct: 384 IELVDDHFEGSLRR 397
>BC004211-1|AAH04211.1| 465|Homo sapiens TSEN2 protein protein.
Length = 465
Score = 34.7 bits (76), Expect = 0.29
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Frame = +1
Query: 352 TIVTLWH*CTDVIPEKSELRILQKYFPLNSWIPKYSLKLVKPQLLFHQ---TFHASYYHS 522
TIV LW T V P + YF W+PK LK LL+ + +HASY
Sbjct: 324 TIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGLKYGTDLLLYRKGPPFYHASYSVI 383
Query: 523 TRL---HCDGLRRR 555
L H +G RR
Sbjct: 384 IELVDDHFEGSLRR 397
>BC004178-1|AAH04178.1| 465|Homo sapiens TSEN2 protein protein.
Length = 465
Score = 34.7 bits (76), Expect = 0.29
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Frame = +1
Query: 352 TIVTLWH*CTDVIPEKSELRILQKYFPLNSWIPKYSLKLVKPQLLFHQ---TFHASYYHS 522
TIV LW T V P + YF W+PK LK LL+ + +HASY
Sbjct: 324 TIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGLKYGTDLLLYRKGPPFYHASYSVI 383
Query: 523 TRL---HCDGLRRR 555
L H +G RR
Sbjct: 384 IELVDDHFEGSLRR 397
>AK074794-1|BAC11213.1| 439|Homo sapiens protein ( Homo sapiens
cDNA FLJ90313 fis, clone NT2RP2001388, weakly similar to
TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2 (EC 3.1.27.9).
).
Length = 439
Score = 34.7 bits (76), Expect = 0.29
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Frame = +1
Query: 352 TIVTLWH*CTDVIPEKSELRILQKYFPLNSWIPKYSLKLVKPQLLFHQ---TFHASYYHS 522
TIV LW T V P + YF W+PK LK LL+ + +HASY
Sbjct: 298 TIVKLWKAFTVVQPTFRTTYMAYHYFRSKGWVPKVGLKYGTDLLLYRKGPPFYHASYSVI 357
Query: 523 TRL---HCDGLRRR 555
L H +G RR
Sbjct: 358 IELVDDHFEGSLRR 371
>AY055757-1|AAL25832.1| 316|Homo sapiens decay-accelerating factor
1a protein.
Length = 316
Score = 32.7 bits (71), Expect = 1.2
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +3
Query: 417 AEVFPSKFLDSQV-FTQARETAAVIPPDVPRILLSFHETTLRRT*KKNTALRTGEKISAS 593
A + KF ++V FTQ+ A V R FHETT + T T +S
Sbjct: 240 ATLTAQKFTTAKVAFTQSPSAAPTRSTPVSRTTKHFHETTPNK--GSGTTSGTTRLLSGH 297
Query: 594 TCIIITGIWST 626
TC +TG+ T
Sbjct: 298 TCFTLTGLLGT 308
>AB240569-1|BAE97425.1| 525|Homo sapiens decay-accelerating factor
splicing variant 4 protein.
Length = 525
Score = 32.7 bits (71), Expect = 1.2
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +3
Query: 417 AEVFPSKFLDSQV-FTQARETAAVIPPDVPRILLSFHETTLRRT*KKNTALRTGEKISAS 593
A + KF ++V FTQ+ A V R FHETT + T T +S
Sbjct: 449 ATLTAQKFTTAKVAFTQSPSAAPTRSTPVSRTTKHFHETTPNK--GSGTTSGTTRLLSGH 506
Query: 594 TCIIITGIWST 626
TC +TG+ T
Sbjct: 507 TCFTLTGLLGT 517
>L02785-1|AAA58443.1| 764|Homo sapiens DRA protein.
Length = 764
Score = 31.5 bits (68), Expect = 2.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 376 CTDVIPEKSELRILQKYFPLNSWIPKYSLK 465
C P+K++ RI+ FP+ SW+P Y LK
Sbjct: 42 CCSCSPQKAK-RIVLSLFPIASWLPAYRLK 70
>BC025671-1|AAH25671.1| 764|Homo sapiens solute carrier family 26,
member 3 protein.
Length = 764
Score = 31.5 bits (68), Expect = 2.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 376 CTDVIPEKSELRILQKYFPLNSWIPKYSLK 465
C P+K++ RI+ FP+ SW+P Y LK
Sbjct: 42 CCSCSPQKAK-RIVLSLFPIASWLPAYRLK 70
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,949,880
Number of Sequences: 237096
Number of extensions: 2028897
Number of successful extensions: 4256
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4256
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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