Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40258
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    27   2.4  
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    27   3.2  
SPCC24B10.14c |xlf1|nej1, mug104|xrcc4 like factor|Schizosacchar...    26   5.6  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    25   9.9  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   9.9  
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    25   9.9  

>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 432 PTSELSSLLLVCSINLDNIKNIKRK*IQY*KLHV 331
           PT  +   LL+  I   NI N+KR+ IQ+ ++H+
Sbjct: 532 PTMIIEGALLIVLIEAHNIANLKRR-IQFRQIHL 564


>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 327

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +3

Query: 435 RSNEMIKTDFN-AISVATTVGSMKVLISLRK*RCEVAHACPRQHV*SLFTFSLSCVIWLG 611
           R  E ++  F  A+ V  T+ S    +S  +       A  RQ   S  T S  CV W+G
Sbjct: 10  RLQEKLEESFKYALRVVFTITSDLGEVSYPQDATVRVEALDRQQSHSRITISKQCVSWIG 69

Query: 612 HG 617
           +G
Sbjct: 70  NG 71


>SPCC24B10.14c |xlf1|nej1, mug104|xrcc4 like
           factor|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 203

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 286 HGTDIVGIWSCIC 324
           H TD+V +WSC C
Sbjct: 30  HITDLVRVWSCTC 42


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 623 NKPVPQPDHTTQRERK*TSHMLP 555
           N+P  +PD  ++RERK  ++ LP
Sbjct: 563 NEPNEKPDGRSRRERKKVNYALP 585


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +1

Query: 109  EVPAQGRRSNTDNEHDAPNGEGKIVKTEEKSDCSD 213
            + P   RR+ TD+    PNG  K+   +   +C +
Sbjct: 1548 DFPELFRRAFTDSWKKVPNGRSKVTIPQNMFECKE 1582


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 173 PSPLGASCSLSVLERLPCAGTSR 105
           P+P  ASC+L +   L C+G  R
Sbjct: 23  PNPQWASCNLGIFICLDCSGQHR 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,795,764
Number of Sequences: 5004
Number of extensions: 58714
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)