Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40258
         (668 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1056 - 30447791-30447850,30448020-30448085,30448299-304485...    29   2.5  
03_01_0168 + 1382531-1383931,1384028-1384150                           29   4.4  
06_01_1186 - 10195175-10195621,10195882-10195930,10196019-101961...    28   5.9  
10_01_0168 - 1883380-1883594,1884572-1888325                           28   7.7  
04_03_0961 + 21263735-21263773,21264157-21264279,21266774-212668...    28   7.7  

>04_04_1056 -
           30447791-30447850,30448020-30448085,30448299-30448583,
           30448744-30448869,30449068-30449154,30449273-30449695
          Length = 348

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 188 VFTIFPSPLGASCSLSVLERLPCAGTSRRPSHVR 87
           V   F  P  A  ++S L   PCAG + R  H+R
Sbjct: 66  VIVRFREPAAAEAAMSALHGRPCAGLAGRVLHIR 99


>03_01_0168 + 1382531-1383931,1384028-1384150
          Length = 507

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 31  DRLLSGKFIRCSTWSRSPRRTCDGRLEVPAQGR 129
           DR++  K    + W RSPRR C   L  P QG+
Sbjct: 452 DRVIVLKKPDPNLWKRSPRRNCCRVLSSPRQGK 484


>06_01_1186 -
           10195175-10195621,10195882-10195930,10196019-10196168,
           10196513-10196658,10196877-10196914,10197000-10197216,
           10197393-10197611,10197753-10197879,10198631-10198812,
           10198928-10199131,10199773-10199782,10200789-10200815,
           10201072-10201132,10201731-10201851
          Length = 665

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -2

Query: 619 SPCPNQITQLNE--NVNKLHTCCLGQACA 539
           S CP+   +L E  N+++ H+CC+G A A
Sbjct: 613 SRCPSHRRELVELLNLHRCHSCCVGAAAA 641


>10_01_0168 - 1883380-1883594,1884572-1888325
          Length = 1322

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 365 KGNEFNIENYMYIWHIHDQIP 303
           K  E N+EN + +W  HD IP
Sbjct: 427 KNYEINVENLIQLWMAHDFIP 447


>04_03_0961 +
           21263735-21263773,21264157-21264279,21266774-21266847,
           21266939-21267095,21267554-21267694,21267739-21267823,
           21268810-21268903,21269041-21269239,21269515-21269549,
           21270076-21270631,21270722-21270882,21271704-21271718,
           21273078-21273330,21273439-21273562,21273688-21273788,
           21274870-21274938,21275060-21275191,21275270-21275404,
           21275489-21275551,21275636-21275881,21276007-21276285
          Length = 1026

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 586 ENVNKLHTCCLGQACATSHLYFLKEINTFI 497
           E +NKLHTC     C+  H++  +E+   I
Sbjct: 787 EKINKLHTCVDYGTCSCRHIFTPEEMTCSI 816


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,241,455
Number of Sequences: 37544
Number of extensions: 382960
Number of successful extensions: 968
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)