Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40258
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21190| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_29034| Best HMM Match : Nucleoplasmin (HMM E-Value=2.2)             32   0.49 
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)             29   2.6  
SB_12328| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_53662| Best HMM Match : Protamine_P2 (HMM E-Value=9.2)              29   3.4  
SB_33752| Best HMM Match : I-set (HMM E-Value=3.7e-15)                 29   4.5  
SB_31564| Best HMM Match : ubiquitin (HMM E-Value=0.0026)              28   6.0  

>SB_21190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 19/32 (59%), Positives = 23/32 (71%)
 Frame = +3

Query: 3   LTASAQQFLRQIAFRQIHKVLDMEPLPKANMR 98
           LTA+AQ  LR  AFRQ+HKVL ++PLP    R
Sbjct: 599 LTAAAQHALRLQAFRQLHKVLGIDPLPPPQRR 630


>SB_29034| Best HMM Match : Nucleoplasmin (HMM E-Value=2.2)
          Length = 186

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +1

Query: 70  WSRSPRRTCDGRLEVPAQGRRSNTDNEHDAPNGEGKIVKTEEKSDCSDTN 219
           W + PR   DG+L V    +R+ TD   DA     +  K E++ +   TN
Sbjct: 106 WLQDPRDLKDGQLVVKQAAKRAATDKSADAKKPNKEKAKKEKEPEKDKTN 155


>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
          Length = 1531

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 85  RRTCDGRLEVPAQGRR-SNTDNEHDAPNGEGKIVKTE 192
           RRT DG  E   + RR S  DNE +  NGE K  K E
Sbjct: 747 RRTPDGTQEPYEKHRRPSFDDNEEECENGEDKARKVE 783


>SB_12328| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 558

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 307 FQRYRCRVAIYT*GLLLAVGRVF*ISITFCWCPN 206
           F+RY     I   G    VG+   + + +CWCPN
Sbjct: 367 FRRYYDNGGIRRQGTAFHVGQTCGLHVCYCWCPN 400


>SB_53662| Best HMM Match : Protamine_P2 (HMM E-Value=9.2)
          Length = 253

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 429 WERSNEMIKTDFNAISVATTVGSMKVLISLRK*RCEVAHACPRQ 560
           WE+  E  + +  A       GS ++++ +   RCE+ H C R+
Sbjct: 138 WEKIEEGCQDEMAARPGIHAAGSEQIVLRVHHMRCEIPHRCVRR 181


>SB_33752| Best HMM Match : I-set (HMM E-Value=3.7e-15)
          Length = 783

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 61  CSTWSRSPRRTCDGRLEVPAQGRRSNTDNEHDAPNGEGKIVKTEEK 198
           C   + + R TC G L V  +   S +++E D    E K+VK  ++
Sbjct: 402 CVAMNDAGRTTCAGNLTVAEEEEESESEDETDEEFYEEKVVKLRKE 447


>SB_31564| Best HMM Match : ubiquitin (HMM E-Value=0.0026)
          Length = 309

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -1

Query: 464 EICLNHLIRALPLQSSLVCSLC-VPSIWII*KI*KGNEFNIENY 336
           ++C + +  A   Q+ ++CSLC +  +W +  + K ++ N +NY
Sbjct: 250 QLCSDSMEHAAYSQAIIMCSLCKIDEVWKVFSLRKISQGNAKNY 293


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,389,634
Number of Sequences: 59808
Number of extensions: 464625
Number of successful extensions: 1176
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)