Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40258
         (668 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical ...    36   0.020
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    29   3.9  
Z37092-2|CAA85453.1|  555|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical
           protein Y95B8A.7 protein.
          Length = 608

 Score = 36.3 bits (80), Expect = 0.020
 Identities = 16/26 (61%), Positives = 21/26 (80%)
 Frame = +3

Query: 3   LTASAQQFLRQIAFRQIHKVLDMEPL 80
           LTA AQ F+RQIAF QIH++L ++ L
Sbjct: 536 LTALAQNFVRQIAFNQIHEILGIDRL 561


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 109 EVPAQGRRSNTDNEHDAPNGEGKIVKTEEKSDCSDTNKK 225
           E+P QG +   D  H++P       K EEK  C    +K
Sbjct: 276 ELPRQGVKIALDTNHNSPPASDLTRKLEEKKFCEKRKRK 314


>Z37092-2|CAA85453.1|  555|Caenorhabditis elegans Hypothetical
           protein F44F4.2 protein.
          Length = 555

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 470 SIEICLNHLIRALPLQSSLVCSLCV 396
           SIE  L H IR  P+  SL+   CV
Sbjct: 464 SIETALMHFIRGSPITKSLILQSCV 488


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,683,432
Number of Sequences: 27780
Number of extensions: 340853
Number of successful extensions: 867
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)