Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40258
         (668 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49400.1 68416.m05400 transducin family protein / WD-40 repea...    30   1.2  
At1g30750.1 68414.m03758 expressed protein                             29   2.8  
At4g27480.1 68417.m03948 glycosyltransferase family 14 protein /...    27   8.5  
At1g02860.1 68414.m00251 SPX (SYG1/Pho81/XPR1) domain-containing...    27   8.5  

>At3g49400.1 68416.m05400 transducin family protein / WD-40 repeat
            family protein contains 4 WD-40 repeats (PF00400); low
            similarity (47%) to Agamous-like MADS box protein AGL5
            (SP:P29385) {Arabidopsis thaliana}
          Length = 892

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = -2

Query: 577  NKLHTCCLG-QACATSHLYFLKEINTFILPTVVATEIALKSVL--IISLERSHFRAL*SA 407
            +KL  CC+  Q C  + L+F K  N   L     T  AL S    + SL +S F  + S 
Sbjct: 809  HKLERCCVSMQVCPPTPLWFCKCCNRMTLELAPETLFALPSFPSDLKSLPKSSFSKVASK 868

Query: 406  P-CVF 395
            P C+F
Sbjct: 869  PFCLF 873


>At1g30750.1 68414.m03758 expressed protein
          Length = 212

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = -1

Query: 260 ASCGSCLLNIDYFLLVSEQSDFSSVFTIFPSPLGASCSLSVLERLPCAGTSRRPSHV 90
           A  G C+L I + LLVS  S+ + V T   +PL  +  +SV +  P  G     S V
Sbjct: 6   AKTGRCMLTIIFCLLVSSISEAAQV-TKITTPLEPTGGVSVNQNQPILGQPSSSSPV 61


>At4g27480.1 68417.m03948 glycosyltransferase family 14 protein /
           core-2/I-branching enzyme family protein contains Pfam
           profile: PF02485 Core-2/I-Branching enzyme
          Length = 421

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -1

Query: 560 LPRAGMCNFTSLLSQGNQYFHTSYCCRDRDSIEICLNH 447
           LPR  +  +T+ LS    YFHT  C     S  + LNH
Sbjct: 277 LPRTLLMYYTNFLSTPEGYFHTVICNAPEYSSTV-LNH 313


>At1g02860.1 68414.m00251 SPX (SYG1/Pho81/XPR1) domain-containing
           protein / zinc finger (C3HC4-type RING finger)
           protein-related weak similarity to tripartite motif
           protein TRIM13 [Mus musculus] GI:12407427, gpStaf50
           [Homo sapiens] GI:899300; contains Pfam profiles
           PF03105: SPX domain, PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 335

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 269 LCIDSHTAPISLESGHVYARYTC 337
           +C+D+   PISL  GH+Y  Y C
Sbjct: 233 ICLDTVFDPISLTCGHIYC-YMC 254


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,628,871
Number of Sequences: 28952
Number of extensions: 307740
Number of successful extensions: 772
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)