Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40257
         (651 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   1.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.9  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   6.7  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 268 CY*NSKKTNDGPY 306
           CY NSK T DG Y
Sbjct: 275 CYYNSKMTKDGVY 287


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 518  HP*EHQHLKHLLYSVVLLAQLHFLLVVYN 604
            HP E   LK+ +   V +  ++ LLV+Y+
Sbjct: 995  HPQEFNCLKYGVIYYVTVPSMYLLLVIYS 1023


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 518  HP*EHQHLKHLLYSVVLLAQLHFLLVVYN 604
            HP E   LK+ +   V +  ++ LLV+Y+
Sbjct: 995  HPQEFNCLKYGVIYYVTVPSMYLLLVIYS 1023


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 302 PTDENNKTQGLFSGFGAFNKAPSS 373
           P DE+    G+ SG    + +PSS
Sbjct: 47  PMDEDKNDSGVTSGSDFHSSSPSS 70


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,909
Number of Sequences: 336
Number of extensions: 2401
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)