Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40257
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces pombe... 28 1.0
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy... 27 1.8
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 27 1.8
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha... 27 2.3
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P... 27 3.1
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po... 26 4.1
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp... 26 5.4
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 25 9.5
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 25 9.5
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 25 9.5
>SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 124
Score = 28.3 bits (60), Expect = 1.0
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 341 GFGAFNKAPSSFDFLANLTKDSKSNA 418
GF + KAP + F+A L+K++ SN+
Sbjct: 30 GFTSIYKAPPPYSFVAGLSKNTSSNS 55
>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 347 GAFNKAPSSFDFLANLTKDSKSNATTTSAESGSAGLF 457
G F+++PS F ++ T+DS + ++S S A LF
Sbjct: 113 GIFDQSPSQIPFPSSNTEDSSEESDSSSRASRLAKLF 149
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 293 TTAPTDENNKTQGLFSGFGAFN-KAPSSFDFLANLTKDSKSNATTTS 430
T T + GLF A N APS+F F T + +NA+T+S
Sbjct: 40 TNNNTSSTAPSGGLFGSNNASNTSAPSTFSFGKAATTGNSTNASTSS 86
>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 353 FNKAPSSFDFLANLTKDSKSNATTT 427
F K PSSF+F+ N T+ S + T
Sbjct: 16 FGKRPSSFEFIVNKTRFSSAPVVAT 40
>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 26.6 bits (56), Expect = 3.1
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = -1
Query: 348 PKPLNSP*VLLFSS--VGAVVRLFAVLITRFSSNPWVQL*KFPSPYFLQDLLDPNFHGSN 175
PK +NSP F S VG + L++R + L F + + P FHGSN
Sbjct: 205 PKYVNSPDYTTFPSSFVGTAEYVAPELLSRQVVSKSSDLWAFACVVYQMIVGSPPFHGSN 264
Query: 174 PS 169
P+
Sbjct: 265 PN 266
>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 198 QEDPEENKEMGTFKAAPKDYWKSV-LLKQQKDERRPLL 308
+ED EE KE+GT + + ++V + +Q DE + LL
Sbjct: 109 REDQEETKEVGTAEMVDRFAKRTVKVTRQHNDEAKRLL 146
>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
Alp13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 135 SPVIMSVKRQATTDLNHENWDQEDPEENKEMGTFKAAP 248
SP+ VKR TTD +E + EN E F+ P
Sbjct: 131 SPIPQQVKRDGTTDAKNE---ETTKPENNEKDDFEEEP 165
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -1
Query: 300 AVVRLFAVLITRFSSNPWVQL*KFPSPYFLQDLLDPNFHGSNPS 169
A+ +L++ SS W+ + PYF + L + H NP+
Sbjct: 95 AIFAAINLLLSSLSSLKWISIGSILLPYFKKKELSISEHKINPN 138
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 174 DLNHENWDQEDPEENKEMGTFKAAPK 251
D +HEN D + EN E KAA K
Sbjct: 53 DNDHENLDSNNNNENNEAFNEKAAEK 78
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 335 FSGFGAFNKA-PSSFDFLANLTKDSKSNATTTSAESGS 445
FSG +F+ + PSS + DS S+A + E+GS
Sbjct: 512 FSGRNSFSVSRPSSSHSTLSYANDSASSAVNVAGETGS 549
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,245,820
Number of Sequences: 5004
Number of extensions: 39937
Number of successful extensions: 111
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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