Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40257
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0628 - 16367841-16369259                                         33   0.20 
12_02_0547 - 20291895-20292043,20292339-20293164                       31   1.1  
08_02_0757 + 20840885-20841281,20842937-20843025,20843132-208432...    27   9.8  

>05_03_0628 - 16367841-16369259
          Length = 472

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +3

Query: 150 SVKRQATTDLNHENWDQEDPEENKEMGTFKAAPKD 254
           S KR A T +N +N + +D    +EMGTFK A ++
Sbjct: 10  SRKRVAGTQINKDNPEPDDDSTEQEMGTFKRASEE 44


>12_02_0547 - 20291895-20292043,20292339-20293164
          Length = 324

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 168 TTDLNHENWDQEDPEENKEMGTFKAAPKDYWKSVLLKQQKDERRP 302
           T     E W   +P+E++E    K  P++Y+ S LL     +++P
Sbjct: 277 TRQAGEEEWGIAEPKEDEEAQLDKIPPQEYYDSTLLPFPPCQKKP 321


>08_02_0757 +
           20840885-20841281,20842937-20843025,20843132-20843257,
           20843617-20844333,20844420-20844630,20844739-20845238,
           20845998-20846023,20846393-20846531,20846579-20846660,
           20846990-20847153
          Length = 816

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 234 FKAAPK-DYWKSVLLKQQKDERRPLLMRITRLKGY 335
           F+++PK  YW+  + ++Q DE       +T+L+GY
Sbjct: 289 FQSSPKHSYWQPYICRRQIDEDGVKPFDVTQLQGY 323


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,623,621
Number of Sequences: 37544
Number of extensions: 232632
Number of successful extensions: 515
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)