Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40257
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50373| Best HMM Match : HC2 (HMM E-Value=0.001)                     30   1.4  
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)               30   1.4  
SB_45853| Best HMM Match : VKG_Carbox (HMM E-Value=8.8e-25)            29   2.5  
SB_52713| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-26)                 28   5.7  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_59402| Best HMM Match : DUF1690 (HMM E-Value=3.4)                   28   7.6  

>SB_50373| Best HMM Match : HC2 (HMM E-Value=0.001)
          Length = 382

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +3

Query: 153 VKRQATTDLNHENWDQEDPEENKEMGTFKAAPKDYWKSVLLKQQKDERR 299
           +K++A    N ++W +     NK     KAA K+Y+ + L + + D R+
Sbjct: 172 LKKKAAQSNNSDDWLEFRLSRNKANNAIKAAKKEYFSAGLERAKNDPRQ 220


>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
          Length = 4240

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +2

Query: 278 TAKRRTTAPTDENNKTQGLFSGFGAFNKAPSSFDFLANLTKDSKSNATTTSAESGSAGLF 457
           TAK++   P +  N++    +G  +F K  SSF + ++   +  +   T   +    GLF
Sbjct: 750 TAKKQEKVPANAANQSSVDETGTSSFPKLSSSFSWFSSKAAEQTAPLVTNKEQGIFGGLF 809

Query: 458 SN 463
           S+
Sbjct: 810 SS 811


>SB_45853| Best HMM Match : VKG_Carbox (HMM E-Value=8.8e-25)
          Length = 854

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -1

Query: 318 LFSSVGAVVRLFAVLITRFSSNPWVQL*KFPSPYFLQDLLDPNFHGSNPSW 166
           L S+VGAV +  A  +    +  +V++ +FPS  F Q  ++PN    +  W
Sbjct: 562 LASNVGAVCKGLASNVGAVCTGIYVRMSRFPSRRFQQRFVNPNIDILHADW 612


>SB_52713| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-26)
          Length = 333

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 29  TINKLSI*FKKIALF*NGMLYMTGVVEIITC*LFAIPGNHVCKTASHDGFE 181
           T+  L I  +++ +  N  ++   V +I T  LF IP    CKT +  GF+
Sbjct: 37  TVMYLIITRRRLHITNNYFIFSLAVSDIATG-LFIIPATFTCKTVAQSGFQ 86


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +3

Query: 123  NCLLSPVIMSVKRQATTDLNHENWDQEDPEENKEMGTFKAAPKDYWKSVL 272
            N LL  VI   +   TT    E W  +  ++  E+G   + P+D  K +L
Sbjct: 1570 NGLLKSVIPDARAYQTTQQTFEPWLSDAEDKLSELGVKSSEPEDMDKQLL 1619


>SB_59402| Best HMM Match : DUF1690 (HMM E-Value=3.4)
          Length = 339

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/54 (22%), Positives = 28/54 (51%)
 Frame = +3

Query: 141 VIMSVKRQATTDLNHENWDQEDPEENKEMGTFKAAPKDYWKSVLLKQQKDERRP 302
           +I + K  +TT+   +N+D ++ E   +      +  + ++S L +Q K ++ P
Sbjct: 88  LIENAKENSTTEETKDNYDTKEKEPEIDKNALSNSKTENFESALEQQVKGKKEP 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,307,327
Number of Sequences: 59808
Number of extensions: 289561
Number of successful extensions: 641
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)