Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40257
         (651 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82243-1|CAI17926.1|  468|Homo sapiens nucleoporin 50kDa protein.      39   0.018
CR456533-1|CAG30419.1|  468|Homo sapiens NUP50 protein.                39   0.018
BC070133-1|AAH70133.1|  468|Homo sapiens nucleoporin 50kDa protein.    39   0.018
AL389950-1|CAB97528.1|  178|Homo sapiens NPAP60L, nucleoporin pr...    39   0.018
AL389949-1|CAB97527.1|  179|Homo sapiens NPAP60L, nucleoporin pr...    39   0.018
AL008718-1|CAI17944.1|  468|Homo sapiens nucleoporin 50kDa protein.    39   0.018
AF107840-1|AAD53401.1|  468|Homo sapiens nuclear pore-associated...    39   0.018

>Z82243-1|CAI17926.1|  468|Homo sapiens nucleoporin 50kDa protein.
          Length = 468

 Score = 38.7 bits (86), Expect = 0.018
 Identities = 19/44 (43%), Positives = 27/44 (61%)
 Frame = +3

Query: 156 KRQATTDLNHENWDQEDPEENKEMGTFKAAPKDYWKSVLLKQQK 287
           KR A  +L   NWDQED  E +E+GTF  A ++  K+  +K+ K
Sbjct: 3   KRNAEKELTDRNWDQED--EAEEVGTFSMASEEVLKNRAIKKAK 44


>CR456533-1|CAG30419.1|  468|Homo sapiens NUP50 protein.
          Length = 468

 Score = 38.7 bits (86), Expect = 0.018
 Identities = 19/44 (43%), Positives = 27/44 (61%)
 Frame = +3

Query: 156 KRQATTDLNHENWDQEDPEENKEMGTFKAAPKDYWKSVLLKQQK 287
           KR A  +L   NWDQED  E +E+GTF  A ++  K+  +K+ K
Sbjct: 3   KRNAEKELTDRNWDQED--EAEEVGTFSMASEEVLKNRAIKKAK 44


>BC070133-1|AAH70133.1|  468|Homo sapiens nucleoporin 50kDa protein.
          Length = 468

 Score = 38.7 bits (86), Expect = 0.018
 Identities = 19/44 (43%), Positives = 27/44 (61%)
 Frame = +3

Query: 156 KRQATTDLNHENWDQEDPEENKEMGTFKAAPKDYWKSVLLKQQK 287
           KR A  +L   NWDQED  E +E+GTF  A ++  K+  +K+ K
Sbjct: 3   KRNAEKELTDRNWDQED--EAEEVGTFSMASEEVLKNRAIKKAK 44


>AL389950-1|CAB97528.1|  178|Homo sapiens NPAP60L, nucleoporin
           protein protein.
          Length = 178

 Score = 38.7 bits (86), Expect = 0.018
 Identities = 19/44 (43%), Positives = 27/44 (61%)
 Frame = +3

Query: 156 KRQATTDLNHENWDQEDPEENKEMGTFKAAPKDYWKSVLLKQQK 287
           KR A  +L   NWDQED  E +E+GTF  A ++  K+  +K+ K
Sbjct: 3   KRNAEKELTDRNWDQED--EAEEVGTFSMASEEVLKNRAIKKAK 44


>AL389949-1|CAB97527.1|  179|Homo sapiens NPAP60L, nucleoporin
           protein protein.
          Length = 179

 Score = 38.7 bits (86), Expect = 0.018
 Identities = 19/44 (43%), Positives = 27/44 (61%)
 Frame = +3

Query: 156 KRQATTDLNHENWDQEDPEENKEMGTFKAAPKDYWKSVLLKQQK 287
           KR A  +L   NWDQED  E +E+GTF  A ++  K+  +K+ K
Sbjct: 3   KRNAEKELTDRNWDQED--EAEEVGTFSMASEEVLKNRAIKKAK 44


>AL008718-1|CAI17944.1|  468|Homo sapiens nucleoporin 50kDa protein.
          Length = 468

 Score = 38.7 bits (86), Expect = 0.018
 Identities = 19/44 (43%), Positives = 27/44 (61%)
 Frame = +3

Query: 156 KRQATTDLNHENWDQEDPEENKEMGTFKAAPKDYWKSVLLKQQK 287
           KR A  +L   NWDQED  E +E+GTF  A ++  K+  +K+ K
Sbjct: 3   KRNAEKELTDRNWDQED--EAEEVGTFSMASEEVLKNRAIKKAK 44


>AF107840-1|AAD53401.1|  468|Homo sapiens nuclear pore-associated
           protein protein.
          Length = 468

 Score = 38.7 bits (86), Expect = 0.018
 Identities = 19/44 (43%), Positives = 27/44 (61%)
 Frame = +3

Query: 156 KRQATTDLNHENWDQEDPEENKEMGTFKAAPKDYWKSVLLKQQK 287
           KR A  +L   NWDQED  E +E+GTF  A ++  K+  +K+ K
Sbjct: 3   KRNAEKELTDRNWDQED--EAEEVGTFSMASEEVLKNRAIKKAK 44


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,470,603
Number of Sequences: 237096
Number of extensions: 1322351
Number of successful extensions: 2651
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2651
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)