Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40256
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    27   1.7  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    27   2.9  
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.9  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   5.1  

>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 391 CQRYTTMGSDGMSKCTA*LVLATSPFNPLIIRKQLTIIN 275
           C +YTT+ SDG S+ T+ L    S  N  +    +TI N
Sbjct: 40  CSQYTTIYSDGPSEYTSTLPYTHSFSNASVYTTLITITN 78


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = -3

Query: 114  AVRVCALVCSLFENNNSGVTIDSLIYYCVSINLY 13
            ++R+C +  S+F++ NS  T  +  +  VS+++Y
Sbjct: 905  SLRICTIPNSIFDSPNSHTTNSNSFFTKVSLDIY 938


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 30  HSNK*GYQSSHLNYCSQINYRQEHTL 107
           HS   GY SS LN  S++N  ++H L
Sbjct: 272 HSAHNGYSSSTLNLNSELNVMKDHDL 297


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 471 VNVK*YHSTLAFNNPFLKNTFQISLLWTL 557
           ++V  +H+ L ++ PFLKN    + L TL
Sbjct: 893 IDVLLFHNVLKYSEPFLKNLAYDTFLLTL 921


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,562,006
Number of Sequences: 5004
Number of extensions: 52917
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)