Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40256
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0310 - 24301274-24301945,24302035-24302365,24302629-243029...    28   7.0  
03_06_0505 - 34397054-34397087,34397127-34397474,34397650-343977...    27   9.2  

>04_04_0310 -
           24301274-24301945,24302035-24302365,24302629-24302954,
           24303039-24303413
          Length = 567

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 508 IIHSLRTHSKLAYCGRYDHV 567
           I+H LR HS    CGR+D++
Sbjct: 275 ILHELRDHSAGLNCGRWDYI 294


>03_06_0505 -
           34397054-34397087,34397127-34397474,34397650-34397757,
           34397847-34398161,34399027-34399442,34399531-34400946
          Length = 878

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 81  FENNNSGVTIDSLIYYCVSINLY 13
           FE   S VT+ S+I YC+ ++LY
Sbjct: 584 FEELQSMVTVPSIIAYCMMLSLY 606


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,287,108
Number of Sequences: 37544
Number of extensions: 296747
Number of successful extensions: 466
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)