Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40256
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   0.80 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   4.3  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 14/62 (22%), Positives = 24/62 (38%)
 Frame = +1

Query: 430 VSNCLDKFDATHPP*MSNNIIQHWHSIIHSLRTHSKLAYCGRYDHVGFRQRFWKFRLVLC 609
           V +CL  ++    P     + + W SI+ S  T  +      YDH+ +       R  + 
Sbjct: 426 VKDCLISWNPLMQPKQPIKLFEQWKSILESGTTTLQTRTMHPYDHLVWNSWMPSIRGAIQ 485

Query: 610 HW 615
            W
Sbjct: 486 QW 487


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 337 ITQYIWTFHHYPWS 378
           +TQ IWT HH  W+
Sbjct: 58  VTQ-IWTDHHLKWN 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,218
Number of Sequences: 438
Number of extensions: 3792
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)