Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40255
         (622 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   1.2  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    24   1.2  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   1.6  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   4.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.3  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   8.3  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   8.3  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   8.3  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/39 (25%), Positives = 15/39 (38%)
 Frame = +3

Query: 51  RIRTSKCRFSQSYRHLIGHERQRSGGSNQLLLRATQRTC 167
           R+   KC F   Y+H + +  +   GS          TC
Sbjct: 230 RLTCPKCPFITEYKHHLEYHLRNHAGSKPFQCNKCDYTC 268


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 356 GWRSNGFTCICLCTIRSAKWKARLHVHSC 442
           G  SNG  C CL T  SAK + +    SC
Sbjct: 182 GKASNGNKCCCLRTCSSAK-RPKFENSSC 209


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/39 (33%), Positives = 15/39 (38%)
 Frame = +3

Query: 255 WATGNEVTNHSSVIHEYYSRKCREPVHVTLDTSLAGGRM 371
           WA G        V+   YS      V    DTSL  GR+
Sbjct: 479 WANGTLAKLSPKVLEPLYSGNLAVSVATPNDTSLVRGRL 517


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 221 EESIPLKVLLVVGDWQ*SNQP 283
           E++  LK+LL +G W   + P
Sbjct: 585 EKNPDLKILLAIGGWAFGSTP 605


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 15/47 (31%), Positives = 17/47 (36%)
 Frame = +2

Query: 80   TELSAPYWARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*T 220
            TE   P W      WW   T S   T      ++R   TR   TS T
Sbjct: 1028 TEHMHPDWTTKPSTWWSSTTTSPWWTTT---TTRRTTTTRPTTTSTT 1071


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 332 PCYSGHFTGWRSNGFTCIC 388
           PC +G     + N F CIC
Sbjct: 76  PCENGGTCVDKINAFQCIC 94


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -3

Query: 551 GPSARPRRSTRDFHRHSLLAHLQ 483
           GP+  P  +T+  + H +  H+Q
Sbjct: 150 GPTGSPPLTTQSMNNHHMGHHMQ 172


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -3

Query: 551 GPSARPRRSTRDFHRHSLLAHLQ 483
           GP+  P  +T+  + H +  H+Q
Sbjct: 152 GPTGSPPLTTQSMNNHHMGHHMQ 174


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,662
Number of Sequences: 336
Number of extensions: 3497
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)