Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40255
(622 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0034 - 228939-229028,229117-229230,229309-229430,229827-23... 71 6e-13
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130... 59 3e-09
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 43 2e-04
11_01_0241 - 1858391-1859143,1859577-1859819 29 2.3
12_01_0238 - 1789114-1790211 29 3.9
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741... 29 3.9
11_01_0433 - 3323372-3324616,3324708-3324905 28 5.2
12_01_0401 + 3174256-3174326,3175138-3176822,3177049-3177269 28 6.9
10_07_0138 + 13325418-13325954 28 6.9
05_05_0039 - 21782093-21782320,21782383-21782754,21783031-217834... 28 6.9
05_03_0649 - 16566815-16567392,16567491-16567623,16568000-165687... 28 6.9
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 28 6.9
06_03_0969 - 26413534-26413594,26415020-26415318 27 9.1
>05_01_0034 -
228939-229028,229117-229230,229309-229430,229827-230056,
230458-230537,230641-230859
Length = 284
Score = 71.3 bits (167), Expect = 6e-13
Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Frame = +1
Query: 10 SVKVHPVVLFQIVDAYERRNADSHRVIGTLLGTS-DKGVVEVTNCFCVPHKEHADQVEAE 186
S +V VV+F I D+Y RR + RVIGTLLG+ G V V N + VPH E DQV +
Sbjct: 18 SARVEAVVVFNICDSYVRRPDQAERVIGTLLGSVLPDGTVHVRNSYVVPHNESPDQVALD 77
Query: 187 LNYAMDVYELNRRVNSSESIVG 252
+ Y ++Y + +VN E IVG
Sbjct: 78 IEYHHNMYASHHKVNPKEVIVG 99
Score = 55.2 bits (127), Expect = 4e-08
Identities = 24/84 (28%), Positives = 46/84 (54%)
Frame = +3
Query: 255 WATGNEVTNHSSVIHEYYSRKCREPVHVTLDTSLAGGRMGLRAYVCVPLGVPNGKQGCMF 434
++TG V+ S++IH++YSR+ + P+H+T+DT G ++AY+ L + + F
Sbjct: 101 FSTGFGVSGGSTLIHDFYSREVQSPIHLTVDTGFTRGDASIKAYISSNLSLGDRHLAAQF 160
Query: 435 TPVDVTLTCYEPEIVGLQVCQKTV 506
+ + L E VG + + T+
Sbjct: 161 QEIPLDLRMLEAGKVGFDILKSTI 184
>04_04_1468 +
33811471-33811657,33811888-33811980,33812899-33813027,
33813089-33813166,33813377-33813435,33813522-33813644,
33814225-33814282,33814383-33814468,33814564-33814635
Length = 294
Score = 58.8 bits (136), Expect = 3e-09
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Frame = +1
Query: 13 VKVHPVVLFQIVDAYERRNADSH-RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE--- 180
V VHP+VL IVD Y R D+ RV+G LLGTS +G V+VTN + VP +E
Sbjct: 17 VVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGSVDVTNSYAVPFEEDDKDPRIWF 76
Query: 181 AELNYAMDVYELNRRVNS 234
+ NY ++ + +R+N+
Sbjct: 77 LDHNYHESMFSMFKRINA 94
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 85 VIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNRRVNSSESIVG 252
V G LLG V+EVTNCF P +E ++ +A+ NY +++ R VN + VG
Sbjct: 57 VTGQLLGLDVGSVLEVTNCFPFPMREDDEEADADGANYQLEMMRCLREVNVDNNTVG 113
>11_01_0241 - 1858391-1859143,1859577-1859819
Length = 331
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -3
Query: 539 RPRRSTRDFHRHSLLAHLQTYNLRFIARESDIYRSEHATL 420
+P + RD+ H + + LR I RE+D+Y S+ ATL
Sbjct: 25 KPEQLIRDYLNHWITGR-PSEELRDIVREADVYGSDPATL 63
>12_01_0238 - 1789114-1790211
Length = 365
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -3
Query: 539 RPRRSTRDFHRHSLLAHLQTYNLRFIARESDIYRSEHATL 420
+P + RD+ H + LR I RE+D+Y S+ ATL
Sbjct: 25 KPEQLIRDYLNHWITGR-PIEELRDIVREADVYGSDPATL 63
>07_03_1709 -
28873172-28873327,28873519-28873584,28874067-28874127,
28875406-28875462,28876301-28876531,28876685-28876799,
28876897-28877136,28877222-28877316,28877406-28877585,
28877663-28877839,28877920-28878890
Length = 782
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 424 PCFPFGTPNGTQTYARKPIRPPASEVSRVTWTG 326
P PF +P + +AR P P +E+S TG
Sbjct: 599 PDSPFASPTKSAGFARDPFAPTEAEISATASTG 631
>11_01_0433 - 3323372-3324616,3324708-3324905
Length = 480
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 228 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVG 133
D++V L+ IH+ I F F ++FVW +A+G
Sbjct: 321 DAAVVLMLIHQFITFGFACTPLYFVWE-KAIG 351
>12_01_0401 + 3174256-3174326,3175138-3176822,3177049-3177269
Length = 658
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = -2
Query: 576 LAATAPARRSERAATP--LDPRLPPTQSSGTLADLQSQVH 463
L T P RS R P LDPR PPT S + + + H
Sbjct: 39 LRVTPPRPRSRRDINPPHLDPRKPPTPSPSSSSQSLDRHH 78
>10_07_0138 + 13325418-13325954
Length = 178
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1
Query: 496 RRLCRWKSRVERRGRALGPARRCCR 570
RR RW+SR RR R RRC R
Sbjct: 92 RRSRRWRSRCSRRWRRSWRRRRCSR 116
>05_05_0039 -
21782093-21782320,21782383-21782754,21783031-21783496,
21784896-21784993,21785179-21785362,21785462-21785574,
21785942-21786127,21786191-21786364
Length = 606
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 228 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVG 133
D++V L+ IH+ I F F ++FVW +A+G
Sbjct: 311 DAAVILMLIHQFITFGFACTPLYFVWE-KAIG 341
>05_03_0649 -
16566815-16567392,16567491-16567623,16568000-16568765,
16569242-16569260,16569320-16569367,16569401-16569506
Length = 549
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -2
Query: 564 APARRSERAATPLDPRLPPTQSSG 493
AP RR E A P LPP SSG
Sbjct: 150 APPRRGEEHARPRSIALPPASSSG 173
>01_05_0320 -
20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 104 ARATKEWWK*PTASACHTKN-MPIKSK 181
A +KEWW +ACH N +P+K K
Sbjct: 508 AGLSKEWWGEAVLTACHVLNKIPMKHK 534
>06_03_0969 - 26413534-26413594,26415020-26415318
Length = 119
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 487 KCARRLCRWKSRVERRGRALGPARRCCRG 573
+ AR RW+SR +G ARR RG
Sbjct: 39 RAARATARWRSRAAAQGSPAAAARRRSRG 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,375,040
Number of Sequences: 37544
Number of extensions: 383032
Number of successful extensions: 1132
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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