Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40255
(622 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical pr... 60 9e-10
AF067219-13|AAC17024.1| 362|Caenorhabditis elegans Proteasome r... 46 3e-05
Z46242-12|CAA86332.1| 690|Caenorhabditis elegans Hypothetical p... 32 0.29
Z46242-11|CAA86326.1| 1077|Caenorhabditis elegans Hypothetical p... 32 0.29
AF256467-1|AAF71546.1| 690|Caenorhabditis elegans SEL-5B serine... 32 0.29
AF256466-1|AAF71545.1| 1077|Caenorhabditis elegans SEL-5A serine... 32 0.29
Z68760-4|CAE17822.1| 160|Caenorhabditis elegans Hypothetical pr... 30 1.5
U49795-1|AAB03859.1| 673|Caenorhabditis elegans DNA-binding pro... 28 4.7
U49794-1|AAB03858.1| 673|Caenorhabditis elegans lag-1 protein. 28 4.7
AF100663-8|AAM98006.1| 671|Caenorhabditis elegans Lin-12 and gl... 28 4.7
AF100663-7|AAC68978.3| 673|Caenorhabditis elegans Lin-12 and gl... 28 4.7
Z81493-1|CAB04039.1| 178|Caenorhabditis elegans Hypothetical pr... 28 6.2
AL132951-5|CAC44307.1| 426|Caenorhabditis elegans Hypothetical ... 28 6.2
AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu... 28 6.2
Z70286-2|CAA94290.1| 529|Caenorhabditis elegans Hypothetical pr... 27 8.2
AJ582071-1|CAE46541.1| 529|Caenorhabditis elegans flavin monoox... 27 8.2
AF067617-4|AAC17557.1| 381|Caenorhabditis elegans Hypothetical ... 27 8.2
>Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical
protein D2013.7 protein.
Length = 294
Score = 60.5 bits (140), Expect = 9e-10
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Frame = +1
Query: 4 NISVKVHPVVLFQIVDAYERR------NADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEH 165
N++V VHP V +VD + RR N + +GTL+G +KG ++VTNCF +P E
Sbjct: 4 NLTVNVHPGVYMNVVDTHMRRTKSSAKNTGQEKCMGTLMGYYEKGSIQVTNCFAIPFNES 63
Query: 166 ADQVEAELNYAMDVYELNRRVNSSESIVG 252
D +E + + + ++ + +E VG
Sbjct: 64 NDDLEIDDQFNQQMISALKKTSPNEQPVG 92
>AF067219-13|AAC17024.1| 362|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 8 protein.
Length = 362
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Frame = +1
Query: 13 VKVHPVVLFQIVDAYER--RNADSHRVIGTLLGTSDKG-VVEVTNCFCVPHKEHADQVEA 183
V VHP+VL +VD + R + RV+G LLG+ K +++ N F VP E
Sbjct: 41 VTVHPLVLLSVVDHFNRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKST 100
Query: 184 ---ELNYAMDVYELNRRVNSSESIVG 252
+++Y +Y + +V + E IVG
Sbjct: 101 WFLDMDYLESMYGMFYKVAAKEKIVG 126
>Z46242-12|CAA86332.1| 690|Caenorhabditis elegans Hypothetical
protein F35G12.3b protein.
Length = 690
Score = 32.3 bits (70), Expect = 0.29
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 552 RSERAATPLDPRLPPTQSSGTLADLQSQVHS 460
R++R ++P +P PP QSS +A L QV S
Sbjct: 354 RNKRDSSPRNPEAPPIQSSSKMASLSQQVPS 384
>Z46242-11|CAA86326.1| 1077|Caenorhabditis elegans Hypothetical
protein F35G12.3a protein.
Length = 1077
Score = 32.3 bits (70), Expect = 0.29
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 552 RSERAATPLDPRLPPTQSSGTLADLQSQVHS 460
R++R ++P +P PP QSS +A L QV S
Sbjct: 354 RNKRDSSPRNPEAPPIQSSSKMASLSQQVPS 384
>AF256467-1|AAF71546.1| 690|Caenorhabditis elegans SEL-5B
serine/threonine kinase protein.
Length = 690
Score = 32.3 bits (70), Expect = 0.29
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 552 RSERAATPLDPRLPPTQSSGTLADLQSQVHS 460
R++R ++P +P PP QSS +A L QV S
Sbjct: 354 RNKRDSSPRNPEAPPIQSSSKMASLSQQVPS 384
>AF256466-1|AAF71545.1| 1077|Caenorhabditis elegans SEL-5A
serine/threonine kinase protein.
Length = 1077
Score = 32.3 bits (70), Expect = 0.29
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 552 RSERAATPLDPRLPPTQSSGTLADLQSQVHS 460
R++R ++P +P PP QSS +A L QV S
Sbjct: 354 RNKRDSSPRNPEAPPIQSSSKMASLSQQVPS 384
>Z68760-4|CAE17822.1| 160|Caenorhabditis elegans Hypothetical
protein F36H1.9 protein.
Length = 160
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 137 TASACHTKNMPIKSKRNLITRWMFTS 214
T ACHT M + K+N IT W +++
Sbjct: 55 TLVACHTLQMFLAEKKNTITHWKYST 80
>U49795-1|AAB03859.1| 673|Caenorhabditis elegans DNA-binding
protein LAG-1 protein.
Length = 673
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +2
Query: 101 WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLVVGD 262
W AT + + H P+ RN T WMFT+ T + + + LV D
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLVRDD 646
>U49794-1|AAB03858.1| 673|Caenorhabditis elegans lag-1 protein.
Length = 673
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +2
Query: 101 WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLVVGD 262
W AT + + H P+ RN T WMFT+ T + + + LV D
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLVRDD 646
>AF100663-8|AAM98006.1| 671|Caenorhabditis elegans Lin-12 and glp-1
phenotype protein1, isoform b protein.
Length = 671
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +2
Query: 101 WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLVVGD 262
W AT + + H P+ RN T WMFT+ T + + + LV D
Sbjct: 591 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLVRDD 644
>AF100663-7|AAC68978.3| 673|Caenorhabditis elegans Lin-12 and glp-1
phenotype protein1, isoform a protein.
Length = 673
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +2
Query: 101 WARATKEWWK*PTASACHTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLVVGD 262
W AT + + H P+ RN T WMFT+ T + + + LV D
Sbjct: 593 WFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLVRDD 646
>Z81493-1|CAB04039.1| 178|Caenorhabditis elegans Hypothetical
protein F01D5.1 protein.
Length = 178
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 124 PLLCRSCPIRCR*LCENLHFDVRMRPQFEIKQQD 23
PLL SCP+ C+ LC + P F+ K D
Sbjct: 44 PLLKESCPVTCK-LCPPTEAPTTLAPCFDDKDTD 76
>AL132951-5|CAC44307.1| 426|Caenorhabditis elegans Hypothetical
protein Y67H2A.6 protein.
Length = 426
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +1
Query: 13 VKVHPVVLFQIVDAYERRNADS----HRVIGTLLGTSDKGVVEVTNCF 144
V +HP+V+ Q+ + Y R +V G +LG + VE N F
Sbjct: 14 VLLHPLVIMQMSEHYSRTKVQQGPTVKKVFGAILGRQNGRQVEAINSF 61
>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
(myotubularin) family protein 5 protein.
Length = 1744
Score = 27.9 bits (59), Expect = 6.2
Identities = 9/24 (37%), Positives = 11/24 (45%)
Frame = +2
Query: 386 CLCTIRSAKWKARLHVHSCRCHSH 457
C CT +W +H CR H H
Sbjct: 1556 CYCTNILTRWSKAVHCKKCRIHVH 1579
>Z70286-2|CAA94290.1| 529|Caenorhabditis elegans Hypothetical
protein K08C7.5 protein.
Length = 529
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 178 RLDRHVLCVARRSSWLLPPLLCRSCP 101
R+ + V V RR +WL+P L R P
Sbjct: 205 RIAKQVYLVTRRGTWLIPKLETRGLP 230
>AJ582071-1|CAE46541.1| 529|Caenorhabditis elegans flavin
monooxygenase protein.
Length = 529
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 178 RLDRHVLCVARRSSWLLPPLLCRSCP 101
R+ + V V RR +WL+P L R P
Sbjct: 205 RIAKQVYLVTRRGTWLIPKLETRGLP 230
>AF067617-4|AAC17557.1| 381|Caenorhabditis elegans Hypothetical
protein T04D1.2 protein.
Length = 381
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 32 FYFKLWTHTNVEMQILTELSAPYWARA 112
FY +W+ T V + LT YW R+
Sbjct: 118 FYDMMWSQTTVSYRFLTTPPVTYWIRS 144
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,405,548
Number of Sequences: 27780
Number of extensions: 322160
Number of successful extensions: 893
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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