Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40255
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   1.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   1.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   4.2  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              22   5.5  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   5.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.5  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.7  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.7  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.7  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.7  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.7  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.7  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.7  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
 Frame = +3

Query: 6   Y*CKGPSCCFISNCGRIRTSKCRFSQSY-----RHLIGHERQRSGGSNQLLLRAT 155
           Y C+    C I    R R   CR+ +       R  +  ERQR+   +Q  + +T
Sbjct: 144 YACREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVEST 198


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
 Frame = +3

Query: 6   Y*CKGPSCCFISNCGRIRTSKCRFSQSY-----RHLIGHERQRSGGSNQLLLRAT 155
           Y C+    C I    R R   CR+ +       R  +  ERQR+   +Q  + +T
Sbjct: 144 YACREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVEST 198


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 148 RRSSWLLPPLLCRSCPIRCR 89
           RRS  + PP    +CP+ C+
Sbjct: 333 RRSEPVEPPRRKNNCPLHCK 352


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 371 GFTCICLCTIRSAKWKARLHVHSCRC 448
           GF C+C+  +   + K RLH     C
Sbjct: 9   GF-CVCVGALTIEELKTRLHTEQSVC 33


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 190 NYAMDVYELNRRVNSSE 240
           NY  DVY+ N  V+S E
Sbjct: 7   NYYGDVYQWNHTVSSGE 23


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 5/19 (26%), Positives = 13/19 (68%)
 Frame = -1

Query: 295 ITEEWLVTSLPVAHNQQYF 239
           ++ EW +  +P + N++Y+
Sbjct: 211 LSVEWDILEVPASRNEEYY 229


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 331 SMLLWTLHWLEVEWV 375
           + +L T  WL++EWV
Sbjct: 30  NQILTTNAWLKLEWV 44


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 331 SMLLWTLHWLEVEWV 375
           + +L T  WL++EWV
Sbjct: 30  NQILTTNAWLKLEWV 44


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 331 SMLLWTLHWLEVEWV 375
           + +L T  WL++EWV
Sbjct: 30  NQILTTNAWLKLEWV 44


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 331 SMLLWTLHWLEVEWV 375
           + +L T  WL++EWV
Sbjct: 30  NQILTTNAWLKLEWV 44


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 331 SMLLWTLHWLEVEWV 375
           + +L T  WL++EWV
Sbjct: 30  NQILTTNAWLKLEWV 44


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 331 SMLLWTLHWLEVEWV 375
           + +L T  WL++EWV
Sbjct: 30  NQILTTNAWLKLEWV 44


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 331 SMLLWTLHWLEVEWV 375
           + +L T  WL++EWV
Sbjct: 98  NQILTTNAWLKLEWV 112


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 331 SMLLWTLHWLEVEWV 375
           + +L T  WL++EWV
Sbjct: 98  NQILTTNAWLKLEWV 112


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 331 SMLLWTLHWLEVEWVYVHM 387
           + LL T  WL++EW  V+M
Sbjct: 67  NQLLITNLWLKLEWNDVNM 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,053
Number of Sequences: 438
Number of extensions: 4052
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)