Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40255
(622 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g39990.1 68415.m04914 eukaryotic translation initiation facto... 75 3e-14
At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su... 67 8e-12
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su... 66 1e-11
At1g10840.1 68414.m01246 eukaryotic translation initiation facto... 44 1e-04
At5g01240.2 68418.m00032 amino acid permease, putative strong si... 30 1.1
At5g01240.1 68418.m00031 amino acid permease, putative strong si... 30 1.1
At5g02190.1 68418.m00140 aspartyl protease family protein contai... 29 2.5
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 29 2.5
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 29 2.5
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 29 2.5
>At2g39990.1 68415.m04914 eukaryotic translation initiation factor 3
subunit 5 / eIF-3 epsilon / eIF3f (TIF3F1) identical to
SP|O04202 Eukaryotic translation initiation factor 3
subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 293
Score = 75.4 bits (177), Expect = 3e-14
Identities = 33/83 (39%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Frame = +1
Query: 7 ISVKVHPVVLFQIVDAYERRNADSHRVIGTLLGTS-DKGVVEVTNCFCVPHKEHADQVEA 183
++ ++HP+V+F + D + RR + RVIGTLLG+ G V++ N + VPH E +DQV
Sbjct: 26 LTARIHPLVIFNVCDCFVRRPDSAERVIGTLLGSILPDGTVDIRNSYAVPHNESSDQVAV 85
Query: 184 ELNYAMDVYELNRRVNSSESIVG 252
+++Y ++ + +VNS E+IVG
Sbjct: 86 DIDYHHNMLASHLKVNSKETIVG 108
Score = 53.6 bits (123), Expect = 1e-07
Identities = 26/83 (31%), Positives = 45/83 (54%)
Frame = +3
Query: 255 WATGNEVTNHSSVIHEYYSRKCREPVHVTLDTSLAGGRMGLRAYVCVPLGVPNGKQGCMF 434
++TG V SS+IH++Y+R+ P+H+T+DT G ++A+V L + + + F
Sbjct: 110 YSTGAGVNGGSSLIHDFYAREVPNPIHLTVDTGFTNGEGTIKAFVSSNLSLGDRQLVAHF 169
Query: 435 TPVDVTLTCYEPEIVGLQVCQKT 503
+ V L + E VG V + T
Sbjct: 170 QEIPVDLRMVDAERVGFDVLKAT 192
>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26s proteasome regulatory subunit s12
(proteasome subunit p40) (mov34 protein) SP:P26516 from
[Mus musculus]; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 308
Score = 67.3 bits (157), Expect = 8e-12
Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Frame = +1
Query: 13 VKVHPVVLFQIVDAYERRNADSH-RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE--- 180
V VHP+VL IVD Y R DS RV+G LLG+S +GVV+VTN + VP +E
Sbjct: 17 VVVHPLVLLSIVDHYNRVAKDSSKRVVGVLLGSSSRGVVDVTNSYAVPFEEDDKDPSIWF 76
Query: 181 AELNYAMDVYELNRRVNSSESIVG 252
+ NY ++ + +R+N+ E +VG
Sbjct: 77 LDHNYHESMFHMFKRINAKEHVVG 100
>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26S proteasome regulatory subunit S12
(MOV34) SP:P26516 from [Mus musculus]
Length = 310
Score = 66.5 bits (155), Expect = 1e-11
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Frame = +1
Query: 13 VKVHPVVLFQIVDAYERRNAD-SHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE--- 180
V VHP+VL IVD Y R D S RV+G LLG+S +G V+VTN + VP +E
Sbjct: 17 VIVHPLVLLSIVDHYNRVAKDTSKRVVGVLLGSSSRGTVDVTNSYAVPFEEDDKDTSIWF 76
Query: 181 AELNYAMDVYELNRRVNSSESIVG 252
+ NY ++ + +R+N+ E IVG
Sbjct: 77 LDHNYHESMFHMFKRINAKEHIVG 100
>At1g10840.1 68414.m01246 eukaryotic translation initiation factor 3
subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) identical to
SP|Q9C5Z2 Eukaryotic translation initiation factor 3
subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 337
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 85 VIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNRRVNSSESIVG 252
V G LLG V+EVTNCF P ++ +++EA+ NY +++ R VN + VG
Sbjct: 47 VTGQLLGLDVGSVLEVTNCFPFPVRDDDEEIEADGANYQLEMMRCLREVNVDNNTVG 103
>At5g01240.2 68418.m00032 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 408
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -2
Query: 228 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 124
D++V L+ IH+ I F F ++FVW +A+G H
Sbjct: 238 DTAVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 271
>At5g01240.1 68418.m00031 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 488
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -2
Query: 228 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 124
D++V L+ IH+ I F F ++FVW +A+G H
Sbjct: 318 DTAVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 351
>At5g02190.1 68418.m00140 aspartyl protease family protein contains
Pfam profile PF00026: Eukaryotic aspartyl protease
Length = 453
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = +1
Query: 145 CVPHKEHADQVEAELNYAMDVYELNRRVNSSESIVGC-GRLAMK*PTTPLLYTSITPVNA 321
C +AD +E N A +++ N S I GC G ++ P T + +N
Sbjct: 150 CHATLSYADASSSEGNLAAEIFHFGNSTNDSNLIFGCMGSVSGSDPEEDTKTTGLLGMNR 209
Query: 322 VSLSML 339
SLS +
Sbjct: 210 GSLSFI 215
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 29.1 bits (62), Expect = 2.5
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = +1
Query: 172 QVEAELNYAMDVYELNRRVNSSESIVGC----GRL-AMK*PTTPLLYTSITPVNAVSLSM 336
Q + E+ + D+ L + + S + G +L M+ T YT++ PVNAVSLS
Sbjct: 185 QSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVNAVSLSP 244
Query: 337 LL 342
LL
Sbjct: 245 LL 246
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 29.1 bits (62), Expect = 2.5
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = +1
Query: 172 QVEAELNYAMDVYELNRRVNSSESIVGC----GRL-AMK*PTTPLLYTSITPVNAVSLSM 336
Q + E+ + D+ L + + S + G +L M+ T YT++ PVNAVSLS
Sbjct: 185 QSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVNAVSLSP 244
Query: 337 LL 342
LL
Sbjct: 245 LL 246
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 29.1 bits (62), Expect = 2.5
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = +1
Query: 172 QVEAELNYAMDVYELNRRVNSSESIVGC----GRL-AMK*PTTPLLYTSITPVNAVSLSM 336
Q + E+ + D+ L + + S + G +L M+ T YT++ PVNAVSLS
Sbjct: 185 QSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVNAVSLSP 244
Query: 337 LL 342
LL
Sbjct: 245 LL 246
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,485,670
Number of Sequences: 28952
Number of extensions: 291954
Number of successful extensions: 797
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -