Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40254
         (688 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.58 
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   4.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   5.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   5.4  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   7.2  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +1

Query: 52  YFLALFTIYVIANMCHLLVILFSLAFMHILFRLRLAII*YY*STFLSKKYVICS*LVINV 231
           Y   LFT++++     LLV ++   +MH+LF     I   +    L   Y  C+ +++  
Sbjct: 243 YAFILFTVHLL-----LLVCIYYFYYMHLLFCCAFIIFTMHLLFLLCIYYFYCALIILLC 297

Query: 232 TQY 240
             Y
Sbjct: 298 IYY 300



 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +2

Query: 65  FLPFTL-LPTCVIY*LYCFHSHLCIYY 142
           F+ FT+    C  Y  Y F   LC+YY
Sbjct: 89  FIIFTVHFLLCTYYFYYAFIILLCVYY 115


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 649 NFVNLIPKGSIGSLREDIVY 590
           + VN++PKG I  +  D VY
Sbjct: 363 DIVNMLPKGEIFHMGGDEVY 382


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -3

Query: 494 FN*TYNRRRKLRL*SIKYILPLE**YEKVFKIPCSSSNFIFVFHVFCVIRT 342
           FN  YN+RR+    ++  IL L   YE   KI  + S     + +  +I T
Sbjct: 843 FNEFYNQRRRWMPSTMANILDLLMDYEHTVKINENISMLYIGYQIILMIGT 893


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -3

Query: 494 FN*TYNRRRKLRL*SIKYILPLE**YEKVFKIPCSSSNFIFVFHVFCVIRT 342
           FN  YN+RR+    ++  IL L   YE   KI  + S     + +  +I T
Sbjct: 843 FNEFYNQRRRWMPSTMANILDLLMDYEHTVKINENISMLYIGYQIILMIGT 893


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 52  YFLALFTIYVIANMCH 99
           YF+ LFT+Y I    H
Sbjct: 149 YFIYLFTVYYIYYSVH 164


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,883
Number of Sequences: 336
Number of extensions: 2887
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)