Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40254
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    29   0.83 
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    27   3.4  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   7.8  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   7.8  
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom...    25   7.8  

>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 343 VLMTQNTWNTKIKLLLLHGILNTFSYYYSSGKMYFMDYNR 462
           +L   N W     L L+  I+ T SY+ S+   Y++ ++R
Sbjct: 54  LLDRNNVWRQFTSLFLITWIMGTLSYFLSASFAYYVYFDR 93


>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +1

Query: 388 LLHGILNTFSYYYSSGKMYFMDYNRN 465
           L+H  L+ ++  Y  GK+YF+D +++
Sbjct: 285 LVHADLSEYNLLYHKGKVYFIDVSQS 310


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -2

Query: 597 SFTRK*R-EPNYKPTLRCSTTLRN 529
           SF R  R +P YKP  R ST LRN
Sbjct: 107 SFIRSVRSKPKYKPGTRRSTRLRN 130


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +3

Query: 24  LLQCFLFNVIFLGAFYHLRYCQHVSFISYIVFTRIYAYTI*IKISYNLILLINFFVKEI 200
           +L C +F+   L      R C+ + FIS  +F+ I  Y +      +LI L N    EI
Sbjct: 648 ILICLIFSQFMLAMGNRPRSCRVLLFISTALFSIIMIYFVFCVFYISLIPLHNSDNSEI 706


>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 43  LMLYFLALFTIYVIANMCHLLVI 111
           L L+FL +F +Y    + HLLVI
Sbjct: 18  LRLFFLVVFGLYSFTLILHLLVI 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,441,203
Number of Sequences: 5004
Number of extensions: 43440
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)