Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40254
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1480 - 37660591-37660720,37660899-37660930,37661061-376611...    28   6.0  

>01_06_1480 -
           37660591-37660720,37660899-37660930,37661061-37661155,
           37661460-37661527,37661608-37661694,37662884-37662912,
           37663019-37663138,37663854-37663905,37663986-37664050,
           37664174-37664536,37664637-37664711,37664803-37664940,
           37665025-37665181,37665471-37665478,37665576-37665710,
           37665965-37666082,37666791-37666915,37667571-37667717,
           37668297-37668380,37668671-37668800,37669196-37669347,
           37669678-37669857,37670660-37670731,37671104-37671295,
           37671366-37671411,37671498-37671647,37671725-37671882,
           37671995-37672101,37672191-37672407,37672484-37672696,
           37672852-37672972,37673072-37673253,37673475-37673672,
           37674770-37674967
          Length = 1447

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -2

Query: 678 FEYFNLIHIKIS*ILF---RKVQLEV*EKISFTRK*REPNYKPTLRCSTTLRNIYEKHLE 508
           F YF   HIK   I+F   R++QLE+   +S   K  EP+ +   +   + RN+     +
Sbjct: 495 FSYFKPQHIKALHIIFSLKRRLQLEMQAYLSLRAKKEEPSDEIQKKFCASFRNMSVAFAD 554

Query: 507 *TNV 496
            +NV
Sbjct: 555 ASNV 558


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,599,542
Number of Sequences: 37544
Number of extensions: 215936
Number of successful extensions: 376
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)